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Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities

COVID-19 forecasting models have been critical in guiding decision-making on surveillance testing, social distancing, and vaccination requirements. Beyond influencing public health policies, an accurate COVID-19 forecasting model can impact community spread by enabling employers and university leade...

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Autores principales: Kumaresan, Vignesh, Balachandar, Niranjan, Poole, Sarah F., Myers, Lance J., Varghese, Paul, Washington, Vindell, Jia, Yugang, Lee, Vivian S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10035834/
https://www.ncbi.nlm.nih.gov/pubmed/36952500
http://dx.doi.org/10.1371/journal.pone.0283517
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author Kumaresan, Vignesh
Balachandar, Niranjan
Poole, Sarah F.
Myers, Lance J.
Varghese, Paul
Washington, Vindell
Jia, Yugang
Lee, Vivian S.
author_facet Kumaresan, Vignesh
Balachandar, Niranjan
Poole, Sarah F.
Myers, Lance J.
Varghese, Paul
Washington, Vindell
Jia, Yugang
Lee, Vivian S.
author_sort Kumaresan, Vignesh
collection PubMed
description COVID-19 forecasting models have been critical in guiding decision-making on surveillance testing, social distancing, and vaccination requirements. Beyond influencing public health policies, an accurate COVID-19 forecasting model can impact community spread by enabling employers and university leaders to adapt worksite policies and practices to contain or mitigate outbreaks. While many such models have been developed for COVID-19 forecasting at the national, state, county, or city level, only a few models have been developed for workplaces and universities. Furthermore, COVID-19 forecasting models have rarely been validated against real COVID-19 case data. Here we present the systematic parameter fitting and validation of an agent-based compartment model for the forecasting of daily COVID-19 cases in single-site workplaces and universities with real-world data. Our approaches include manual fitting, where initial model parameters are chosen based on historical data, and automated fitting, where parameters are chosen based on candidate case trajectory simulations that result in best fit to prevalence estimation data. We use a 14-day fitting window and validate our approaches on 7- and 14-day testing windows with real COVID-19 case data from one employer. Our manual and automated fitting approaches accurately predicted COVID-19 case trends and outperformed the baseline model (no parameter fitting) across multiple scenarios, including a rising case trajectory (RMSLE values: 2.627 for baseline, 0.562 for manual fitting, 0.399 for automated fitting) and a decreasing case trajectory (RMSLE values: 1.155 for baseline, 0.537 for manual fitting, 0.778 for automated fitting). Our COVID-19 case forecasting model allows decision-makers at workplaces and universities to proactively respond to case trend forecasts, mitigate outbreaks, and promote safety.
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spelling pubmed-100358342023-03-24 Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities Kumaresan, Vignesh Balachandar, Niranjan Poole, Sarah F. Myers, Lance J. Varghese, Paul Washington, Vindell Jia, Yugang Lee, Vivian S. PLoS One Research Article COVID-19 forecasting models have been critical in guiding decision-making on surveillance testing, social distancing, and vaccination requirements. Beyond influencing public health policies, an accurate COVID-19 forecasting model can impact community spread by enabling employers and university leaders to adapt worksite policies and practices to contain or mitigate outbreaks. While many such models have been developed for COVID-19 forecasting at the national, state, county, or city level, only a few models have been developed for workplaces and universities. Furthermore, COVID-19 forecasting models have rarely been validated against real COVID-19 case data. Here we present the systematic parameter fitting and validation of an agent-based compartment model for the forecasting of daily COVID-19 cases in single-site workplaces and universities with real-world data. Our approaches include manual fitting, where initial model parameters are chosen based on historical data, and automated fitting, where parameters are chosen based on candidate case trajectory simulations that result in best fit to prevalence estimation data. We use a 14-day fitting window and validate our approaches on 7- and 14-day testing windows with real COVID-19 case data from one employer. Our manual and automated fitting approaches accurately predicted COVID-19 case trends and outperformed the baseline model (no parameter fitting) across multiple scenarios, including a rising case trajectory (RMSLE values: 2.627 for baseline, 0.562 for manual fitting, 0.399 for automated fitting) and a decreasing case trajectory (RMSLE values: 1.155 for baseline, 0.537 for manual fitting, 0.778 for automated fitting). Our COVID-19 case forecasting model allows decision-makers at workplaces and universities to proactively respond to case trend forecasts, mitigate outbreaks, and promote safety. Public Library of Science 2023-03-23 /pmc/articles/PMC10035834/ /pubmed/36952500 http://dx.doi.org/10.1371/journal.pone.0283517 Text en © 2023 Kumaresan et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kumaresan, Vignesh
Balachandar, Niranjan
Poole, Sarah F.
Myers, Lance J.
Varghese, Paul
Washington, Vindell
Jia, Yugang
Lee, Vivian S.
Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities
title Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities
title_full Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities
title_fullStr Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities
title_full_unstemmed Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities
title_short Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities
title_sort fitting and validation of an agent-based model for covid-19 case forecasting in workplaces and universities
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10035834/
https://www.ncbi.nlm.nih.gov/pubmed/36952500
http://dx.doi.org/10.1371/journal.pone.0283517
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