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Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis

Growth traits are quantitative traits controlled by multiple micro-effect genes. we identified molecular markers related to sheep growth traits, which formed the basis of molecular breeding. In this study, we randomly selected 100 Qira Black sheep and 84 German Merino sheep for the blood collection...

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Autores principales: Tuersuntuoheti, Mirenisa, Zhang, Jihu, Zhou, Wen, Zhang, Cheng-long, Liu, Chunjie, Chang, Qianqian, Liu, Shudong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10035858/
https://www.ncbi.nlm.nih.gov/pubmed/36952432
http://dx.doi.org/10.1371/journal.pone.0283383
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author Tuersuntuoheti, Mirenisa
Zhang, Jihu
Zhou, Wen
Zhang, Cheng-long
Liu, Chunjie
Chang, Qianqian
Liu, Shudong
author_facet Tuersuntuoheti, Mirenisa
Zhang, Jihu
Zhou, Wen
Zhang, Cheng-long
Liu, Chunjie
Chang, Qianqian
Liu, Shudong
author_sort Tuersuntuoheti, Mirenisa
collection PubMed
description Growth traits are quantitative traits controlled by multiple micro-effect genes. we identified molecular markers related to sheep growth traits, which formed the basis of molecular breeding. In this study, we randomly selected 100 Qira Black sheep and 84 German Merino sheep for the blood collection the jugular vein to genotype by using the Illumina Ovine SNP 50K Bead Chip. quality control criteria for statistical analysis were: rejection detection rate < 90% and minimum allele frequency (MAF) < 5%. Then, we performed Genome-wide association studies (GWAS) on sheep body weight, body height, body length, and chest circumference using mixed linear models. After getting 55 SNPs with significant correlation, they were annotated by reference genome of Ovis aries genome (Oar_v4.0) and We obtained a total of 84 candidate genes associated with production traits (BMPR1B, HSD17B3, TMEM63C, etc.). We selected BMPR1B for population validation and found a correlation between the FecB locus and body weight traits. Therefore, this study not only supplements the existing knowledge of molecular markers of sheep growth traits, but also has important theoretical significance and reference value for the mining of functional genes of sheep growth traits.
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spelling pubmed-100358582023-03-24 Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis Tuersuntuoheti, Mirenisa Zhang, Jihu Zhou, Wen Zhang, Cheng-long Liu, Chunjie Chang, Qianqian Liu, Shudong PLoS One Research Article Growth traits are quantitative traits controlled by multiple micro-effect genes. we identified molecular markers related to sheep growth traits, which formed the basis of molecular breeding. In this study, we randomly selected 100 Qira Black sheep and 84 German Merino sheep for the blood collection the jugular vein to genotype by using the Illumina Ovine SNP 50K Bead Chip. quality control criteria for statistical analysis were: rejection detection rate < 90% and minimum allele frequency (MAF) < 5%. Then, we performed Genome-wide association studies (GWAS) on sheep body weight, body height, body length, and chest circumference using mixed linear models. After getting 55 SNPs with significant correlation, they were annotated by reference genome of Ovis aries genome (Oar_v4.0) and We obtained a total of 84 candidate genes associated with production traits (BMPR1B, HSD17B3, TMEM63C, etc.). We selected BMPR1B for population validation and found a correlation between the FecB locus and body weight traits. Therefore, this study not only supplements the existing knowledge of molecular markers of sheep growth traits, but also has important theoretical significance and reference value for the mining of functional genes of sheep growth traits. Public Library of Science 2023-03-23 /pmc/articles/PMC10035858/ /pubmed/36952432 http://dx.doi.org/10.1371/journal.pone.0283383 Text en © 2023 Tuersuntuoheti et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Tuersuntuoheti, Mirenisa
Zhang, Jihu
Zhou, Wen
Zhang, Cheng-long
Liu, Chunjie
Chang, Qianqian
Liu, Shudong
Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis
title Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis
title_full Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis
title_fullStr Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis
title_full_unstemmed Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis
title_short Exploring the growth trait molecular markers in two sheep breeds based on Genome-wide association analysis
title_sort exploring the growth trait molecular markers in two sheep breeds based on genome-wide association analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10035858/
https://www.ncbi.nlm.nih.gov/pubmed/36952432
http://dx.doi.org/10.1371/journal.pone.0283383
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