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Exploring the immunological role and prognostic potential of PPM1M in pan-cancer

PPM1M is a member of the metal-dependent protein phosphatase family, and its role in the immunization process has not been studied in depth. In this study, we investigated the role of PPM1M in pan-cancer. METHODS: Samples of cancer and normal tissues were obtained from the cancer genome atlas and ge...

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Autores principales: Zeng, Rongruo, Wang, Lulu, Zhang, Yuxu, Yang, Ye, Yang, Jie, Qin, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036021/
https://www.ncbi.nlm.nih.gov/pubmed/36961170
http://dx.doi.org/10.1097/MD.0000000000032758
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author Zeng, Rongruo
Wang, Lulu
Zhang, Yuxu
Yang, Ye
Yang, Jie
Qin, Yan
author_facet Zeng, Rongruo
Wang, Lulu
Zhang, Yuxu
Yang, Ye
Yang, Jie
Qin, Yan
author_sort Zeng, Rongruo
collection PubMed
description PPM1M is a member of the metal-dependent protein phosphatase family, and its role in the immunization process has not been studied in depth. In this study, we investigated the role of PPM1M in pan-cancer. METHODS: Samples of cancer and normal tissues were obtained from the cancer genome atlas and genotype-tissue expression. Kaplan–Meier survival curves and Cox regression were used to analyze the effect of PPM1M on prognosis. Functional and pathway enrichment analyses were performed using the R package “clusterProfiler” to explore the role of PPM1M. The Sanger Box database was used to analyze the relationship between PPM1M and tumor immune checkpoint, tumor mutational burden, and microsatellite instability. The Tumor Immune Estimation Resource 2 database and CIBERSORT method were used to analyze the relationship between PPM1M and tumor-infiltrating immune cells. Finally, the cBioPortal database was used to analyze the genomic variation in PPM1M. RESULTS: Among the variety of tumors, the expression of PPM1M was higher in normal tissues than in cancerous tissues. The expression of PPM1M is closely associated with patient prognosis, tumor immune checkpoint, tumor mutational burden, and microsatellite instability. PPM1M is closely associated with the infiltration of immune cells into the tumor microenvironment. In addition, PPM1M is involved in the regulation of several immune-related pathways. CONCLUSION: In pan-cancer, PPM1M affects patient prognosis and may be a potential immunological biomarker. Furthermore, PPM1M may be a potential therapeutic target in tumor immunology.
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spelling pubmed-100360212023-03-24 Exploring the immunological role and prognostic potential of PPM1M in pan-cancer Zeng, Rongruo Wang, Lulu Zhang, Yuxu Yang, Ye Yang, Jie Qin, Yan Medicine (Baltimore) 5700 PPM1M is a member of the metal-dependent protein phosphatase family, and its role in the immunization process has not been studied in depth. In this study, we investigated the role of PPM1M in pan-cancer. METHODS: Samples of cancer and normal tissues were obtained from the cancer genome atlas and genotype-tissue expression. Kaplan–Meier survival curves and Cox regression were used to analyze the effect of PPM1M on prognosis. Functional and pathway enrichment analyses were performed using the R package “clusterProfiler” to explore the role of PPM1M. The Sanger Box database was used to analyze the relationship between PPM1M and tumor immune checkpoint, tumor mutational burden, and microsatellite instability. The Tumor Immune Estimation Resource 2 database and CIBERSORT method were used to analyze the relationship between PPM1M and tumor-infiltrating immune cells. Finally, the cBioPortal database was used to analyze the genomic variation in PPM1M. RESULTS: Among the variety of tumors, the expression of PPM1M was higher in normal tissues than in cancerous tissues. The expression of PPM1M is closely associated with patient prognosis, tumor immune checkpoint, tumor mutational burden, and microsatellite instability. PPM1M is closely associated with the infiltration of immune cells into the tumor microenvironment. In addition, PPM1M is involved in the regulation of several immune-related pathways. CONCLUSION: In pan-cancer, PPM1M affects patient prognosis and may be a potential immunological biomarker. Furthermore, PPM1M may be a potential therapeutic target in tumor immunology. Lippincott Williams & Wilkins 2023-03-24 /pmc/articles/PMC10036021/ /pubmed/36961170 http://dx.doi.org/10.1097/MD.0000000000032758 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 5700
Zeng, Rongruo
Wang, Lulu
Zhang, Yuxu
Yang, Ye
Yang, Jie
Qin, Yan
Exploring the immunological role and prognostic potential of PPM1M in pan-cancer
title Exploring the immunological role and prognostic potential of PPM1M in pan-cancer
title_full Exploring the immunological role and prognostic potential of PPM1M in pan-cancer
title_fullStr Exploring the immunological role and prognostic potential of PPM1M in pan-cancer
title_full_unstemmed Exploring the immunological role and prognostic potential of PPM1M in pan-cancer
title_short Exploring the immunological role and prognostic potential of PPM1M in pan-cancer
title_sort exploring the immunological role and prognostic potential of ppm1m in pan-cancer
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036021/
https://www.ncbi.nlm.nih.gov/pubmed/36961170
http://dx.doi.org/10.1097/MD.0000000000032758
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