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Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning

Chest X-rays (CXR) are the most commonly used imaging methodology in radiology to diagnose pulmonary diseases with close to 2 billion CXRs taken every year. The recent upsurge of COVID-19 and its variants accompanied by pneumonia and tuberculosis can be fatal in some cases and lives could be saved t...

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Autores principales: Khan, Asad Mansoor, Akram, Muhammad Usman, Nazir, Sajid, Hassan, Taimur, Khawaja, Sajid Gul, Fatima, Tatheer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036214/
https://www.ncbi.nlm.nih.gov/pubmed/36987448
http://dx.doi.org/10.1016/j.bspc.2023.104855
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author Khan, Asad Mansoor
Akram, Muhammad Usman
Nazir, Sajid
Hassan, Taimur
Khawaja, Sajid Gul
Fatima, Tatheer
author_facet Khan, Asad Mansoor
Akram, Muhammad Usman
Nazir, Sajid
Hassan, Taimur
Khawaja, Sajid Gul
Fatima, Tatheer
author_sort Khan, Asad Mansoor
collection PubMed
description Chest X-rays (CXR) are the most commonly used imaging methodology in radiology to diagnose pulmonary diseases with close to 2 billion CXRs taken every year. The recent upsurge of COVID-19 and its variants accompanied by pneumonia and tuberculosis can be fatal in some cases and lives could be saved through early detection and appropriate intervention for the advanced cases. Thus CXRs can be used for an automated severity grading of pulmonary diseases that can aid radiologists in making better and informed diagnoses. In this article, we propose a single framework for disease classification and severity scoring produced by segmenting the lungs into six regions. We present a modified progressive learning technique in which the amount of augmentations at each step is capped. Our base network in the framework is first trained using modified progressive learning and can then be tweaked for new data sets. Furthermore, the segmentation task makes use of an attention map generated within and by the network itself. This attention mechanism allows to achieve segmentation results that are on par with networks having an order of magnitude or more parameters. We also propose severity score grading for 4 thoracic diseases that can provide a single-digit score corresponding to the spread of opacity in different lung segments with the help of radiologists. The proposed framework is evaluated using the BRAX data set for segmentation and classification into six classes with severity grading for a subset of the classes. On the BRAX validation data set, we achieve F1 scores of 0.924 and 0.939 without and with fine-tuning, respectively. A mean matching score of 80.8% is obtained for severity score grading while an average area under receiver operating characteristic curve of 0.88 is achieved for classification.
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spelling pubmed-100362142023-03-24 Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning Khan, Asad Mansoor Akram, Muhammad Usman Nazir, Sajid Hassan, Taimur Khawaja, Sajid Gul Fatima, Tatheer Biomed Signal Process Control Article Chest X-rays (CXR) are the most commonly used imaging methodology in radiology to diagnose pulmonary diseases with close to 2 billion CXRs taken every year. The recent upsurge of COVID-19 and its variants accompanied by pneumonia and tuberculosis can be fatal in some cases and lives could be saved through early detection and appropriate intervention for the advanced cases. Thus CXRs can be used for an automated severity grading of pulmonary diseases that can aid radiologists in making better and informed diagnoses. In this article, we propose a single framework for disease classification and severity scoring produced by segmenting the lungs into six regions. We present a modified progressive learning technique in which the amount of augmentations at each step is capped. Our base network in the framework is first trained using modified progressive learning and can then be tweaked for new data sets. Furthermore, the segmentation task makes use of an attention map generated within and by the network itself. This attention mechanism allows to achieve segmentation results that are on par with networks having an order of magnitude or more parameters. We also propose severity score grading for 4 thoracic diseases that can provide a single-digit score corresponding to the spread of opacity in different lung segments with the help of radiologists. The proposed framework is evaluated using the BRAX data set for segmentation and classification into six classes with severity grading for a subset of the classes. On the BRAX validation data set, we achieve F1 scores of 0.924 and 0.939 without and with fine-tuning, respectively. A mean matching score of 80.8% is obtained for severity score grading while an average area under receiver operating characteristic curve of 0.88 is achieved for classification. Elsevier Ltd. 2023-08 2023-03-24 /pmc/articles/PMC10036214/ /pubmed/36987448 http://dx.doi.org/10.1016/j.bspc.2023.104855 Text en © 2023 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Khan, Asad Mansoor
Akram, Muhammad Usman
Nazir, Sajid
Hassan, Taimur
Khawaja, Sajid Gul
Fatima, Tatheer
Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning
title Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning
title_full Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning
title_fullStr Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning
title_full_unstemmed Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning
title_short Multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning
title_sort multi-head deep learning framework for pulmonary disease detection and severity scoring with modified progressive learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036214/
https://www.ncbi.nlm.nih.gov/pubmed/36987448
http://dx.doi.org/10.1016/j.bspc.2023.104855
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