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Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models
Many would probably be content to use Bayesian methodology for hypothesis testing, if it was easy, objective and with trustworthy assumptions. The Bayesian information criterion and some simple bounds on Bayes factor are closest to fit this bill, but with clear limitations. Here we develop an approx...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036629/ https://www.ncbi.nlm.nih.gov/pubmed/36959371 http://dx.doi.org/10.1038/s41598-023-31838-8 |
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author | Rostgaard, Klaus |
author_facet | Rostgaard, Klaus |
author_sort | Rostgaard, Klaus |
collection | PubMed |
description | Many would probably be content to use Bayesian methodology for hypothesis testing, if it was easy, objective and with trustworthy assumptions. The Bayesian information criterion and some simple bounds on Bayes factor are closest to fit this bill, but with clear limitations. Here we develop an approximation of the so-called Bayes factor applicable in any bio-statistical settings where we have a d-dimensional parameter estimate of interest and the d x d dimensional (co-)variance of it. By design the approximation is monotone in the p value. It it thus a tool to transform p values into evidence (probabilities of the null and the alternative hypothesis, respectively). It is an improvement on the aforementioned techniques by being more flexible, intuitive and versatile but just as easy to calculate, requiring only statistics that will typically be available: e.g. a p value or test statistic and the dimension of the alternative hypothesis. |
format | Online Article Text |
id | pubmed-10036629 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-100366292023-03-25 Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models Rostgaard, Klaus Sci Rep Article Many would probably be content to use Bayesian methodology for hypothesis testing, if it was easy, objective and with trustworthy assumptions. The Bayesian information criterion and some simple bounds on Bayes factor are closest to fit this bill, but with clear limitations. Here we develop an approximation of the so-called Bayes factor applicable in any bio-statistical settings where we have a d-dimensional parameter estimate of interest and the d x d dimensional (co-)variance of it. By design the approximation is monotone in the p value. It it thus a tool to transform p values into evidence (probabilities of the null and the alternative hypothesis, respectively). It is an improvement on the aforementioned techniques by being more flexible, intuitive and versatile but just as easy to calculate, requiring only statistics that will typically be available: e.g. a p value or test statistic and the dimension of the alternative hypothesis. Nature Publishing Group UK 2023-03-23 /pmc/articles/PMC10036629/ /pubmed/36959371 http://dx.doi.org/10.1038/s41598-023-31838-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Rostgaard, Klaus Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models |
title | Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models |
title_full | Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models |
title_fullStr | Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models |
title_full_unstemmed | Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models |
title_short | Simple nested Bayesian hypothesis testing for meta-analysis, Cox, Poisson and logistic regression models |
title_sort | simple nested bayesian hypothesis testing for meta-analysis, cox, poisson and logistic regression models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036629/ https://www.ncbi.nlm.nih.gov/pubmed/36959371 http://dx.doi.org/10.1038/s41598-023-31838-8 |
work_keys_str_mv | AT rostgaardklaus simplenestedbayesianhypothesistestingformetaanalysiscoxpoissonandlogisticregressionmodels |