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Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins
Visible and near-infrared (Vis-NIR) spectroscopy has been widely applied in many fields for the qualitative and quantitative analysis. Chemometric techniques including pre-processing, variable selection, and multivariate calibration models play an important role to better extract useful information...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036815/ https://www.ncbi.nlm.nih.gov/pubmed/36968398 http://dx.doi.org/10.3389/fpls.2023.1121287 |
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author | Li, Ying Via, Brian K. Han, Feifei Li, Yaoxiang Pei, Zhiyong |
author_facet | Li, Ying Via, Brian K. Han, Feifei Li, Yaoxiang Pei, Zhiyong |
author_sort | Li, Ying |
collection | PubMed |
description | Visible and near-infrared (Vis-NIR) spectroscopy has been widely applied in many fields for the qualitative and quantitative analysis. Chemometric techniques including pre-processing, variable selection, and multivariate calibration models play an important role to better extract useful information from spectral data. In this study, a new de-noising method (lifting wavelet transform, LWT), four variable selection methods, as well as two non-linear machine learning models were simultaneously analyzed to compare the impact of chemometric approaches on wood density determination among various tree species and geographical locations. In addition, fruit fly optimization algorithm (FOA) and response surface methodology (RSM) were employed to optimize the parameters of generalized regression neural network (GRNN) and particle swarm optimization-support vector machine (PSO-SVM), respectively. As for various chemometric methods, the optimal chemometric method was different for the same tree species collected from different locations. FOA-GRNN model combined with LWT and CARS deliver the best performance for Chinese white poplar of Heilongjiang province. In contrast, PLS model showed a good performance for Chinese white poplar collected from Jilin province based on raw spectra. However, for other tree species, RSM-PSO-SVM models can improve the performance of wood density prediction compared to traditional linear and FOA-GRNN models. Especially for Acer mono Maxim, when compared to linear models, the coefficient of determination of prediction set ( [Formula: see text] ) and relative prediction deviation (RPD) were increased by 47.70% and 44.48%, respectively. And the dimensionality of Vis-NIR spectral data was decreased from 2048 to 20. Therefore, the appropriate chemometric technique should be selected before building calibration models. |
format | Online Article Text |
id | pubmed-10036815 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100368152023-03-25 Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins Li, Ying Via, Brian K. Han, Feifei Li, Yaoxiang Pei, Zhiyong Front Plant Sci Plant Science Visible and near-infrared (Vis-NIR) spectroscopy has been widely applied in many fields for the qualitative and quantitative analysis. Chemometric techniques including pre-processing, variable selection, and multivariate calibration models play an important role to better extract useful information from spectral data. In this study, a new de-noising method (lifting wavelet transform, LWT), four variable selection methods, as well as two non-linear machine learning models were simultaneously analyzed to compare the impact of chemometric approaches on wood density determination among various tree species and geographical locations. In addition, fruit fly optimization algorithm (FOA) and response surface methodology (RSM) were employed to optimize the parameters of generalized regression neural network (GRNN) and particle swarm optimization-support vector machine (PSO-SVM), respectively. As for various chemometric methods, the optimal chemometric method was different for the same tree species collected from different locations. FOA-GRNN model combined with LWT and CARS deliver the best performance for Chinese white poplar of Heilongjiang province. In contrast, PLS model showed a good performance for Chinese white poplar collected from Jilin province based on raw spectra. However, for other tree species, RSM-PSO-SVM models can improve the performance of wood density prediction compared to traditional linear and FOA-GRNN models. Especially for Acer mono Maxim, when compared to linear models, the coefficient of determination of prediction set ( [Formula: see text] ) and relative prediction deviation (RPD) were increased by 47.70% and 44.48%, respectively. And the dimensionality of Vis-NIR spectral data was decreased from 2048 to 20. Therefore, the appropriate chemometric technique should be selected before building calibration models. Frontiers Media S.A. 2023-03-10 /pmc/articles/PMC10036815/ /pubmed/36968398 http://dx.doi.org/10.3389/fpls.2023.1121287 Text en Copyright © 2023 Li, Via, Han, Li and Pei https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Li, Ying Via, Brian K. Han, Feifei Li, Yaoxiang Pei, Zhiyong Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins |
title | Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins |
title_full | Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins |
title_fullStr | Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins |
title_full_unstemmed | Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins |
title_short | Comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins |
title_sort | comparison of various chemometric methods on visible and near-infrared spectral analysis for wood density prediction among different tree species and geographical origins |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10036815/ https://www.ncbi.nlm.nih.gov/pubmed/36968398 http://dx.doi.org/10.3389/fpls.2023.1121287 |
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