Cargando…
NiemaGraphGen: A memory-efficient global-scale contact network simulation toolkit
Epidemic simulations require the ability to sample contact networks from various random graph models. Existing methods can simulate city-scale or even country-scale contact networks, but they are unable to feasibly simulate global-scale contact networks due to high memory consumption. NiemaGraphGen...
Autor principal: | |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
GigaScience Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10038133/ https://www.ncbi.nlm.nih.gov/pubmed/36968795 http://dx.doi.org/10.46471/gigabyte.37 |
Sumario: | Epidemic simulations require the ability to sample contact networks from various random graph models. Existing methods can simulate city-scale or even country-scale contact networks, but they are unable to feasibly simulate global-scale contact networks due to high memory consumption. NiemaGraphGen (NGG) is a memory-efficient graph generation tool that enables the simulation of global-scale contact networks. NGG avoids storing the entire graph in memory and is instead intended to be used in a data streaming pipeline, resulting in memory consumption that is orders of magnitude smaller than existing tools. NGG provides a massively-scalable solution for simulating social contact networks, enabling global-scale epidemic simulation studies. |
---|