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Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area

BACKGROUND: Biologists have long debated the drivers of the genome size evolution and variation ever since Darwin. Assumptions for the adaptive or maladaptive consequences of the associations between genome sizes and environmental factors have been proposed, but the significance of these hypotheses...

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Autores principales: Hutang, Ge-Ran, Tong, Yan, Zhu, Xun-Ge, Gao, Li-Zhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10040770/
https://www.ncbi.nlm.nih.gov/pubmed/36993864
http://dx.doi.org/10.3389/fpls.2023.1066925
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author Hutang, Ge-Ran
Tong, Yan
Zhu, Xun-Ge
Gao, Li-Zhi
author_facet Hutang, Ge-Ran
Tong, Yan
Zhu, Xun-Ge
Gao, Li-Zhi
author_sort Hutang, Ge-Ran
collection PubMed
description BACKGROUND: Biologists have long debated the drivers of the genome size evolution and variation ever since Darwin. Assumptions for the adaptive or maladaptive consequences of the associations between genome sizes and environmental factors have been proposed, but the significance of these hypotheses remains controversial. Eragrostis is a large genus in the grass family and is often used as crop or forage during the dry seasons. The wide range and complex ploidy levels make Eragrostis an excellent model for investigating how the genome size variation and evolution is associated with environmental factors and how these changes can ben interpreted. METHODS: We reconstructed the Eragrostis phylogeny and estimated genome sizes through flow cytometric analyses. Phylogenetic comparative analyses were performed to explore how genome size variation and evolution is related to their climatic niches and geographical ranges. The genome size evolution and environmental factors were examined using different models to study the phylogenetic signal, mode and tempo throughout evolutionary history. RESULTS: Our results support the monophyly of Eragrostis. The genome sizes in Eragrostis ranged from ~0.66 pg to ~3.80 pg. We found that a moderate phylogenetic conservatism existed in terms of the genome sizes but was absent from environmental factors. In addition, phylogeny-based associations revealed close correlations between genome sizes and precipitation-related variables, indicating that the genome size variation mainly caused by polyploidization may have evolved as an adaptation to various environments in the genus Eragrostis. CONCLUSION: This is the first study to take a global perspective on the genome size variation and evolution in the genus Eragrostis. Our results suggest that the adaptation and conservatism are manifested in the genome size variation, allowing the arid species of Eragrostis to spread the xeric area throughout the world.
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spelling pubmed-100407702023-03-28 Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area Hutang, Ge-Ran Tong, Yan Zhu, Xun-Ge Gao, Li-Zhi Front Plant Sci Plant Science BACKGROUND: Biologists have long debated the drivers of the genome size evolution and variation ever since Darwin. Assumptions for the adaptive or maladaptive consequences of the associations between genome sizes and environmental factors have been proposed, but the significance of these hypotheses remains controversial. Eragrostis is a large genus in the grass family and is often used as crop or forage during the dry seasons. The wide range and complex ploidy levels make Eragrostis an excellent model for investigating how the genome size variation and evolution is associated with environmental factors and how these changes can ben interpreted. METHODS: We reconstructed the Eragrostis phylogeny and estimated genome sizes through flow cytometric analyses. Phylogenetic comparative analyses were performed to explore how genome size variation and evolution is related to their climatic niches and geographical ranges. The genome size evolution and environmental factors were examined using different models to study the phylogenetic signal, mode and tempo throughout evolutionary history. RESULTS: Our results support the monophyly of Eragrostis. The genome sizes in Eragrostis ranged from ~0.66 pg to ~3.80 pg. We found that a moderate phylogenetic conservatism existed in terms of the genome sizes but was absent from environmental factors. In addition, phylogeny-based associations revealed close correlations between genome sizes and precipitation-related variables, indicating that the genome size variation mainly caused by polyploidization may have evolved as an adaptation to various environments in the genus Eragrostis. CONCLUSION: This is the first study to take a global perspective on the genome size variation and evolution in the genus Eragrostis. Our results suggest that the adaptation and conservatism are manifested in the genome size variation, allowing the arid species of Eragrostis to spread the xeric area throughout the world. Frontiers Media S.A. 2023-03-13 /pmc/articles/PMC10040770/ /pubmed/36993864 http://dx.doi.org/10.3389/fpls.2023.1066925 Text en Copyright © 2023 Hutang, Tong, Zhu and Gao https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Hutang, Ge-Ran
Tong, Yan
Zhu, Xun-Ge
Gao, Li-Zhi
Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area
title Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area
title_full Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area
title_fullStr Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area
title_full_unstemmed Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area
title_short Genome size variation and polyploidy prevalence in the genus Eragrostis are associated with the global dispersal in arid area
title_sort genome size variation and polyploidy prevalence in the genus eragrostis are associated with the global dispersal in arid area
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10040770/
https://www.ncbi.nlm.nih.gov/pubmed/36993864
http://dx.doi.org/10.3389/fpls.2023.1066925
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