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Deriving spatially explicit direct and indirect interaction networks from animal movement data

Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the est...

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Autores principales: Yang, Anni, Wilber, Mark Q., Manlove, Kezia R., Miller, Ryan S., Boughton, Raoul, Beasley, James, Northrup, Joseph, VerCauteren, Kurt C., Wittemyer, George, Pepin, Kim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10040956/
https://www.ncbi.nlm.nih.gov/pubmed/36993145
http://dx.doi.org/10.1002/ece3.9774
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author Yang, Anni
Wilber, Mark Q.
Manlove, Kezia R.
Miller, Ryan S.
Boughton, Raoul
Beasley, James
Northrup, Joseph
VerCauteren, Kurt C.
Wittemyer, George
Pepin, Kim
author_facet Yang, Anni
Wilber, Mark Q.
Manlove, Kezia R.
Miller, Ryan S.
Boughton, Raoul
Beasley, James
Northrup, Joseph
VerCauteren, Kurt C.
Wittemyer, George
Pepin, Kim
author_sort Yang, Anni
collection PubMed
description Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the estimation of spatiotemporally explicit interactions, but the discrete nature and coarse temporal resolution of data mean that ephemeral interactions that occur between consecutive GPS locations go undetected. Here, we developed a method to quantify individual and spatial patterns of interaction using continuous‐time movement models (CTMMs) fit to GPS tracking data. We first applied CTMMs to infer the full movement trajectories at an arbitrarily fine temporal scale before estimating interactions, thus allowing inference of interactions occurring between observed GPS locations. Our framework then infers indirect interactions—individuals occurring at the same location, but at different times—while allowing the identification of indirect interactions to vary with ecological context based on CTMM outputs. We assessed the performance of our new method using simulations and illustrated its implementation by deriving disease‐relevant interaction networks for two behaviorally differentiated species, wild pigs (Sus scrofa) that can host African Swine Fever and mule deer (Odocoileus hemionus) that can host chronic wasting disease. Simulations showed that interactions derived from observed GPS data can be substantially underestimated when temporal resolution of movement data exceeds 30‐min intervals. Empirical application suggested that underestimation occurred in both interaction rates and their spatial distributions. CTMM‐Interaction method, which can introduce uncertainties, recovered majority of true interactions. Our method leverages advances in movement ecology to quantify fine‐scale spatiotemporal interactions between individuals from lower temporal resolution GPS data. It can be leveraged to infer dynamic social networks, transmission potential in disease systems, consumer–resource interactions, information sharing, and beyond. The method also sets the stage for future predictive models linking observed spatiotemporal interaction patterns to environmental drivers.
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spelling pubmed-100409562023-03-28 Deriving spatially explicit direct and indirect interaction networks from animal movement data Yang, Anni Wilber, Mark Q. Manlove, Kezia R. Miller, Ryan S. Boughton, Raoul Beasley, James Northrup, Joseph VerCauteren, Kurt C. Wittemyer, George Pepin, Kim Ecol Evol Research Articles Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the estimation of spatiotemporally explicit interactions, but the discrete nature and coarse temporal resolution of data mean that ephemeral interactions that occur between consecutive GPS locations go undetected. Here, we developed a method to quantify individual and spatial patterns of interaction using continuous‐time movement models (CTMMs) fit to GPS tracking data. We first applied CTMMs to infer the full movement trajectories at an arbitrarily fine temporal scale before estimating interactions, thus allowing inference of interactions occurring between observed GPS locations. Our framework then infers indirect interactions—individuals occurring at the same location, but at different times—while allowing the identification of indirect interactions to vary with ecological context based on CTMM outputs. We assessed the performance of our new method using simulations and illustrated its implementation by deriving disease‐relevant interaction networks for two behaviorally differentiated species, wild pigs (Sus scrofa) that can host African Swine Fever and mule deer (Odocoileus hemionus) that can host chronic wasting disease. Simulations showed that interactions derived from observed GPS data can be substantially underestimated when temporal resolution of movement data exceeds 30‐min intervals. Empirical application suggested that underestimation occurred in both interaction rates and their spatial distributions. CTMM‐Interaction method, which can introduce uncertainties, recovered majority of true interactions. Our method leverages advances in movement ecology to quantify fine‐scale spatiotemporal interactions between individuals from lower temporal resolution GPS data. It can be leveraged to infer dynamic social networks, transmission potential in disease systems, consumer–resource interactions, information sharing, and beyond. The method also sets the stage for future predictive models linking observed spatiotemporal interaction patterns to environmental drivers. John Wiley and Sons Inc. 2023-03-26 /pmc/articles/PMC10040956/ /pubmed/36993145 http://dx.doi.org/10.1002/ece3.9774 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Yang, Anni
Wilber, Mark Q.
Manlove, Kezia R.
Miller, Ryan S.
Boughton, Raoul
Beasley, James
Northrup, Joseph
VerCauteren, Kurt C.
Wittemyer, George
Pepin, Kim
Deriving spatially explicit direct and indirect interaction networks from animal movement data
title Deriving spatially explicit direct and indirect interaction networks from animal movement data
title_full Deriving spatially explicit direct and indirect interaction networks from animal movement data
title_fullStr Deriving spatially explicit direct and indirect interaction networks from animal movement data
title_full_unstemmed Deriving spatially explicit direct and indirect interaction networks from animal movement data
title_short Deriving spatially explicit direct and indirect interaction networks from animal movement data
title_sort deriving spatially explicit direct and indirect interaction networks from animal movement data
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10040956/
https://www.ncbi.nlm.nih.gov/pubmed/36993145
http://dx.doi.org/10.1002/ece3.9774
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