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Bayesian cluster analysis
Bayesian cluster analysis offers substantial benefits over algorithmic approaches by providing not only point estimates but also uncertainty in the clustering structure and patterns within each cluster. An overview of Bayesian cluster analysis is provided, including both model-based and loss-based a...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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The Royal Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10041359/ https://www.ncbi.nlm.nih.gov/pubmed/36970819 http://dx.doi.org/10.1098/rsta.2022.0149 |
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author | Wade, S. |
author_facet | Wade, S. |
author_sort | Wade, S. |
collection | PubMed |
description | Bayesian cluster analysis offers substantial benefits over algorithmic approaches by providing not only point estimates but also uncertainty in the clustering structure and patterns within each cluster. An overview of Bayesian cluster analysis is provided, including both model-based and loss-based approaches, along with a discussion on the importance of the kernel or loss selected and prior specification. Advantages are demonstrated in an application to cluster cells and discover latent cell types in single-cell RNA sequencing data to study embryonic cellular development. Lastly, we focus on the ongoing debate between finite and infinite mixtures in a model-based approach and robustness to model misspecification. While much of the debate and asymptotic theory focuses on the marginal posterior of the number of clusters, we empirically show that quite a different behaviour is obtained when estimating the full clustering structure. This article is part of the theme issue ‘Bayesian inference: challenges, perspectives, and prospects’. |
format | Online Article Text |
id | pubmed-10041359 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-100413592023-03-28 Bayesian cluster analysis Wade, S. Philos Trans A Math Phys Eng Sci Articles Bayesian cluster analysis offers substantial benefits over algorithmic approaches by providing not only point estimates but also uncertainty in the clustering structure and patterns within each cluster. An overview of Bayesian cluster analysis is provided, including both model-based and loss-based approaches, along with a discussion on the importance of the kernel or loss selected and prior specification. Advantages are demonstrated in an application to cluster cells and discover latent cell types in single-cell RNA sequencing data to study embryonic cellular development. Lastly, we focus on the ongoing debate between finite and infinite mixtures in a model-based approach and robustness to model misspecification. While much of the debate and asymptotic theory focuses on the marginal posterior of the number of clusters, we empirically show that quite a different behaviour is obtained when estimating the full clustering structure. This article is part of the theme issue ‘Bayesian inference: challenges, perspectives, and prospects’. The Royal Society 2023-05-15 2023-03-27 /pmc/articles/PMC10041359/ /pubmed/36970819 http://dx.doi.org/10.1098/rsta.2022.0149 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Articles Wade, S. Bayesian cluster analysis |
title | Bayesian cluster analysis |
title_full | Bayesian cluster analysis |
title_fullStr | Bayesian cluster analysis |
title_full_unstemmed | Bayesian cluster analysis |
title_short | Bayesian cluster analysis |
title_sort | bayesian cluster analysis |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10041359/ https://www.ncbi.nlm.nih.gov/pubmed/36970819 http://dx.doi.org/10.1098/rsta.2022.0149 |
work_keys_str_mv | AT wades bayesianclusteranalysis |