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Unsupervised Data-Driven Reconstruction of Molecular Motifs in Simple to Complex Dynamic Micelles
[Image: see text] The reshuffling mobility of molecular building blocks in self-assembled micelles is a key determinant of many their interesting properties, from emerging morphologies and surface compartmentalization, to dynamic reconfigurability and stimuli-responsiveness. However, the microscopic...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10041528/ https://www.ncbi.nlm.nih.gov/pubmed/36891625 http://dx.doi.org/10.1021/acs.jpcb.2c08726 |
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author | Cardellini, Annalisa Crippa, Martina Lionello, Chiara Afrose, Syed Pavel Das, Dibyendu Pavan, Giovanni M. |
author_facet | Cardellini, Annalisa Crippa, Martina Lionello, Chiara Afrose, Syed Pavel Das, Dibyendu Pavan, Giovanni M. |
author_sort | Cardellini, Annalisa |
collection | PubMed |
description | [Image: see text] The reshuffling mobility of molecular building blocks in self-assembled micelles is a key determinant of many their interesting properties, from emerging morphologies and surface compartmentalization, to dynamic reconfigurability and stimuli-responsiveness. However, the microscopic details of such complex structural dynamics are typically nontrivial to elucidate, especially in multicomponent assemblies. Here we show a machine-learning approach that allows us to reconstruct the structural and dynamic complexity of mono- and bicomponent surfactant micelles from high-dimensional data extracted from equilibrium molecular dynamics simulations. Unsupervised clustering of smooth overlap of atomic position (SOAP) data enables us to identify, in a set of multicomponent surfactant micelles, the dominant local molecular environments that emerge within them and to retrace their dynamics, in terms of exchange probabilities and transition pathways of the constituent building blocks. Tested on a variety of micelles differing in size and in the chemical nature of the constitutive self-assembling units, this approach effectively recognizes the molecular motifs populating them in an exquisitely agnostic and unsupervised way, and allows correlating them to their composition in terms of constitutive surfactant species. |
format | Online Article Text |
id | pubmed-10041528 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-100415282023-03-28 Unsupervised Data-Driven Reconstruction of Molecular Motifs in Simple to Complex Dynamic Micelles Cardellini, Annalisa Crippa, Martina Lionello, Chiara Afrose, Syed Pavel Das, Dibyendu Pavan, Giovanni M. J Phys Chem B [Image: see text] The reshuffling mobility of molecular building blocks in self-assembled micelles is a key determinant of many their interesting properties, from emerging morphologies and surface compartmentalization, to dynamic reconfigurability and stimuli-responsiveness. However, the microscopic details of such complex structural dynamics are typically nontrivial to elucidate, especially in multicomponent assemblies. Here we show a machine-learning approach that allows us to reconstruct the structural and dynamic complexity of mono- and bicomponent surfactant micelles from high-dimensional data extracted from equilibrium molecular dynamics simulations. Unsupervised clustering of smooth overlap of atomic position (SOAP) data enables us to identify, in a set of multicomponent surfactant micelles, the dominant local molecular environments that emerge within them and to retrace their dynamics, in terms of exchange probabilities and transition pathways of the constituent building blocks. Tested on a variety of micelles differing in size and in the chemical nature of the constitutive self-assembling units, this approach effectively recognizes the molecular motifs populating them in an exquisitely agnostic and unsupervised way, and allows correlating them to their composition in terms of constitutive surfactant species. American Chemical Society 2023-03-09 /pmc/articles/PMC10041528/ /pubmed/36891625 http://dx.doi.org/10.1021/acs.jpcb.2c08726 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Cardellini, Annalisa Crippa, Martina Lionello, Chiara Afrose, Syed Pavel Das, Dibyendu Pavan, Giovanni M. Unsupervised Data-Driven Reconstruction of Molecular Motifs in Simple to Complex Dynamic Micelles |
title | Unsupervised Data-Driven
Reconstruction of Molecular
Motifs in Simple to Complex Dynamic Micelles |
title_full | Unsupervised Data-Driven
Reconstruction of Molecular
Motifs in Simple to Complex Dynamic Micelles |
title_fullStr | Unsupervised Data-Driven
Reconstruction of Molecular
Motifs in Simple to Complex Dynamic Micelles |
title_full_unstemmed | Unsupervised Data-Driven
Reconstruction of Molecular
Motifs in Simple to Complex Dynamic Micelles |
title_short | Unsupervised Data-Driven
Reconstruction of Molecular
Motifs in Simple to Complex Dynamic Micelles |
title_sort | unsupervised data-driven
reconstruction of molecular
motifs in simple to complex dynamic micelles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10041528/ https://www.ncbi.nlm.nih.gov/pubmed/36891625 http://dx.doi.org/10.1021/acs.jpcb.2c08726 |
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