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LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense)
Little millet (Panicum sumatrense) a native of Chhattisgarh, belongs to the minor millet group and is primarily known as a climate-resilient and nutritionally rich crop. However, due to the lack of enough Omic studies on the crop, the scientific community has largely remained unaware of the potentia...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10041709/ https://www.ncbi.nlm.nih.gov/pubmed/36993866 http://dx.doi.org/10.3389/fpls.2023.1106104 |
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author | Shekhar, Shweta Prasad, Archana S. Banjare, Kalpana Kaushik, Abhijeet Mannade, Ajit K. Dubey, Mahima Patil, Arun Premi, Vinay Vishwakarma, Ashish K. Sao, Abhinav Saxena, Ravi R. Dubey, Amit Chandel, Girish |
author_facet | Shekhar, Shweta Prasad, Archana S. Banjare, Kalpana Kaushik, Abhijeet Mannade, Ajit K. Dubey, Mahima Patil, Arun Premi, Vinay Vishwakarma, Ashish K. Sao, Abhinav Saxena, Ravi R. Dubey, Amit Chandel, Girish |
author_sort | Shekhar, Shweta |
collection | PubMed |
description | Little millet (Panicum sumatrense) a native of Chhattisgarh, belongs to the minor millet group and is primarily known as a climate-resilient and nutritionally rich crop. However, due to the lack of enough Omic studies on the crop, the scientific community has largely remained unaware of the potential of this crop, resulting in less scope for its utilization in crop improvement programs. Looking at global warming, erratic climate change, nutritional security, and limited genetic information available, the Little Millet Transcriptome Database (LMT(db)) (https://igkv.ac.in/xenom/index.aspx) was conceptualized upon completion of the transcriptome sequencing of little millet with the aim of deciphering the genetic signatures of this largely unknown crop. The database was developed with the view of providing information about the most comprehensive part of the genome, the ‘Transcriptome’. The database includes transcriptome sequence information, functional annotation, microsatellite markers, DEGs, and pathway information. The database is a freely available resource that provides breeders and scientists a portal to search, browse, and query data to facilitate functional and applied Omic studies in millet crops. |
format | Online Article Text |
id | pubmed-10041709 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100417092023-03-28 LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense) Shekhar, Shweta Prasad, Archana S. Banjare, Kalpana Kaushik, Abhijeet Mannade, Ajit K. Dubey, Mahima Patil, Arun Premi, Vinay Vishwakarma, Ashish K. Sao, Abhinav Saxena, Ravi R. Dubey, Amit Chandel, Girish Front Plant Sci Plant Science Little millet (Panicum sumatrense) a native of Chhattisgarh, belongs to the minor millet group and is primarily known as a climate-resilient and nutritionally rich crop. However, due to the lack of enough Omic studies on the crop, the scientific community has largely remained unaware of the potential of this crop, resulting in less scope for its utilization in crop improvement programs. Looking at global warming, erratic climate change, nutritional security, and limited genetic information available, the Little Millet Transcriptome Database (LMT(db)) (https://igkv.ac.in/xenom/index.aspx) was conceptualized upon completion of the transcriptome sequencing of little millet with the aim of deciphering the genetic signatures of this largely unknown crop. The database was developed with the view of providing information about the most comprehensive part of the genome, the ‘Transcriptome’. The database includes transcriptome sequence information, functional annotation, microsatellite markers, DEGs, and pathway information. The database is a freely available resource that provides breeders and scientists a portal to search, browse, and query data to facilitate functional and applied Omic studies in millet crops. Frontiers Media S.A. 2023-03-09 /pmc/articles/PMC10041709/ /pubmed/36993866 http://dx.doi.org/10.3389/fpls.2023.1106104 Text en Copyright © 2023 Shekhar, Prasad, Banjare, Kaushik, Mannade, Dubey, Patil, Premi, Vishwakarma, Sao, Saxena, Dubey and Chandel https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Shekhar, Shweta Prasad, Archana S. Banjare, Kalpana Kaushik, Abhijeet Mannade, Ajit K. Dubey, Mahima Patil, Arun Premi, Vinay Vishwakarma, Ashish K. Sao, Abhinav Saxena, Ravi R. Dubey, Amit Chandel, Girish LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense) |
title | LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense) |
title_full | LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense) |
title_fullStr | LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense) |
title_full_unstemmed | LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense) |
title_short | LMT(db): A comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (Panicum sumatrense) |
title_sort | lmt(db): a comprehensive transcriptome database for climate-resilient, nutritionally rich little millet (panicum sumatrense) |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10041709/ https://www.ncbi.nlm.nih.gov/pubmed/36993866 http://dx.doi.org/10.3389/fpls.2023.1106104 |
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