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TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma

Tubulin epsilon and delta complex 2 (TEDC2) is a protein coding gene whose functions are poorly identified yet. This study aimed to identify the role of TEDC2 in prognosis and immune microenvironment of lung adenocarcinoma (LUAD). Through The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (G...

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Autores principales: Fang, Likui, Yu, Wenfeng, Zhu, Pengfei, Yu, Guocan, Ye, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10042817/
https://www.ncbi.nlm.nih.gov/pubmed/36973475
http://dx.doi.org/10.1038/s41598-023-32238-8
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author Fang, Likui
Yu, Wenfeng
Zhu, Pengfei
Yu, Guocan
Ye, Bo
author_facet Fang, Likui
Yu, Wenfeng
Zhu, Pengfei
Yu, Guocan
Ye, Bo
author_sort Fang, Likui
collection PubMed
description Tubulin epsilon and delta complex 2 (TEDC2) is a protein coding gene whose functions are poorly identified yet. This study aimed to identify the role of TEDC2 in prognosis and immune microenvironment of lung adenocarcinoma (LUAD). Through The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, the mRNA expression of TEDC2 was upregulated in LUAD tissues compared to normal tissues. The protein level of TEDC2 was also higher in LUAD in the Human Protein Atlas. The receiver operating characteristic (ROC) curve showed that high TEDC2 level could distinguish LUAD patients from normal subjects. In addition, the impact of TEDC2 expression on prognosis was evaluated by Kaplan–Meier and Cox regression analyses, and the results suggested that high TEDC2 expression was significantly associated with poor prognosis and was the independent prognostic factor in LUAD. GO and KEGG pathway analyses indicated the co-expressed genes of TEDC2 were mainly related to mitotic cell cycle processes. Importantly, high expression of TEDC2 indicated low infiltration of immune cells, especially dendritic cells and B cells. TEDC2 was also positively correlated with immune checkpoints such as PDCD1, LAG3 and CD276. Taken together, this study preliminarily revealed the clinical significance of TEDC2 in LUAD and provided novel insights into the role of TEDC2 in immune microenvironment.
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spelling pubmed-100428172023-03-29 TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma Fang, Likui Yu, Wenfeng Zhu, Pengfei Yu, Guocan Ye, Bo Sci Rep Article Tubulin epsilon and delta complex 2 (TEDC2) is a protein coding gene whose functions are poorly identified yet. This study aimed to identify the role of TEDC2 in prognosis and immune microenvironment of lung adenocarcinoma (LUAD). Through The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, the mRNA expression of TEDC2 was upregulated in LUAD tissues compared to normal tissues. The protein level of TEDC2 was also higher in LUAD in the Human Protein Atlas. The receiver operating characteristic (ROC) curve showed that high TEDC2 level could distinguish LUAD patients from normal subjects. In addition, the impact of TEDC2 expression on prognosis was evaluated by Kaplan–Meier and Cox regression analyses, and the results suggested that high TEDC2 expression was significantly associated with poor prognosis and was the independent prognostic factor in LUAD. GO and KEGG pathway analyses indicated the co-expressed genes of TEDC2 were mainly related to mitotic cell cycle processes. Importantly, high expression of TEDC2 indicated low infiltration of immune cells, especially dendritic cells and B cells. TEDC2 was also positively correlated with immune checkpoints such as PDCD1, LAG3 and CD276. Taken together, this study preliminarily revealed the clinical significance of TEDC2 in LUAD and provided novel insights into the role of TEDC2 in immune microenvironment. Nature Publishing Group UK 2023-03-27 /pmc/articles/PMC10042817/ /pubmed/36973475 http://dx.doi.org/10.1038/s41598-023-32238-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Fang, Likui
Yu, Wenfeng
Zhu, Pengfei
Yu, Guocan
Ye, Bo
TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma
title TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma
title_full TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma
title_fullStr TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma
title_full_unstemmed TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma
title_short TEDC2 correlated with prognosis and immune microenvironment in lung adenocarcinoma
title_sort tedc2 correlated with prognosis and immune microenvironment in lung adenocarcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10042817/
https://www.ncbi.nlm.nih.gov/pubmed/36973475
http://dx.doi.org/10.1038/s41598-023-32238-8
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