Cargando…
Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae)
BACKGROUND: Sarotherodon galilaeus (Linné, 1758) is a member of the family Cichlidae, which is considered the most important aquaculture freshwater species endemic to Africa and the Middle East. The genetics and molecular biology of this species are rare. This requires more comprehensive mitochondri...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10042889/ https://www.ncbi.nlm.nih.gov/pubmed/36781609 http://dx.doi.org/10.1007/s11033-023-08288-6 |
_version_ | 1784913030826426368 |
---|---|
author | Fiteha, Yosur G. Rashed, M. A. Ali, R. A. M. Magdy, M. |
author_facet | Fiteha, Yosur G. Rashed, M. A. Ali, R. A. M. Magdy, M. |
author_sort | Fiteha, Yosur G. |
collection | PubMed |
description | BACKGROUND: Sarotherodon galilaeus (Linné, 1758) is a member of the family Cichlidae, which is considered the most important aquaculture freshwater species endemic to Africa and the Middle East. The genetics and molecular biology of this species are rare. This requires more comprehensive mitochondrial genomes-based phylogenetics to enhance understanding of the relationship and delineate this species. METHODS AND RESULTS: Here, we assembled the complete mitogenome of S. galilaeus using Illumina high-throughput sequencing technology. The mango tilapia mitogenome was 16,631 bp in length with an AT composition of 53.4% and 46.4% GC content. It encodes 37 genes comprising two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and 13 protein-coding genes (PCGs) as well as the D-loop known as the control region. The phylogenetic tree was conducted to provide a relationship within the haplotilapiine lineage based on the maximum likelihood method, and the newly sequenced S. galilaeus was clustered with other Sarotherodon species. CONCLUSION: Our results provide a new perception of the genetic basis of S. galilaeus species for further research on systematics, evolution, population genetics, and molecular ecology. |
format | Online Article Text |
id | pubmed-10042889 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-100428892023-03-29 Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae) Fiteha, Yosur G. Rashed, M. A. Ali, R. A. M. Magdy, M. Mol Biol Rep Short Communication BACKGROUND: Sarotherodon galilaeus (Linné, 1758) is a member of the family Cichlidae, which is considered the most important aquaculture freshwater species endemic to Africa and the Middle East. The genetics and molecular biology of this species are rare. This requires more comprehensive mitochondrial genomes-based phylogenetics to enhance understanding of the relationship and delineate this species. METHODS AND RESULTS: Here, we assembled the complete mitogenome of S. galilaeus using Illumina high-throughput sequencing technology. The mango tilapia mitogenome was 16,631 bp in length with an AT composition of 53.4% and 46.4% GC content. It encodes 37 genes comprising two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and 13 protein-coding genes (PCGs) as well as the D-loop known as the control region. The phylogenetic tree was conducted to provide a relationship within the haplotilapiine lineage based on the maximum likelihood method, and the newly sequenced S. galilaeus was clustered with other Sarotherodon species. CONCLUSION: Our results provide a new perception of the genetic basis of S. galilaeus species for further research on systematics, evolution, population genetics, and molecular ecology. Springer Netherlands 2023-02-13 2023 /pmc/articles/PMC10042889/ /pubmed/36781609 http://dx.doi.org/10.1007/s11033-023-08288-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Short Communication Fiteha, Yosur G. Rashed, M. A. Ali, R. A. M. Magdy, M. Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae) |
title | Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae) |
title_full | Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae) |
title_fullStr | Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae) |
title_full_unstemmed | Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae) |
title_short | Characterization and phylogenetic analysis of the complete mitochondrial genome of Mango tilapia (Sarotherodon galilaeus: Cichlidae) |
title_sort | characterization and phylogenetic analysis of the complete mitochondrial genome of mango tilapia (sarotherodon galilaeus: cichlidae) |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10042889/ https://www.ncbi.nlm.nih.gov/pubmed/36781609 http://dx.doi.org/10.1007/s11033-023-08288-6 |
work_keys_str_mv | AT fitehayosurg characterizationandphylogeneticanalysisofthecompletemitochondrialgenomeofmangotilapiasarotherodongalilaeuscichlidae AT rashedma characterizationandphylogeneticanalysisofthecompletemitochondrialgenomeofmangotilapiasarotherodongalilaeuscichlidae AT aliram characterizationandphylogeneticanalysisofthecompletemitochondrialgenomeofmangotilapiasarotherodongalilaeuscichlidae AT magdym characterizationandphylogeneticanalysisofthecompletemitochondrialgenomeofmangotilapiasarotherodongalilaeuscichlidae |