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The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae)
Nymphaea atrans belongs to the subgenus Anecphya and displays varied flower colors over successive days. Because of its excellent ornamental characteristics, this species is widely cultivated in waterscape gardens worldwide. Here, we have sequenced the complete chloroplast genome of N. atrans. The w...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10044148/ https://www.ncbi.nlm.nih.gov/pubmed/36998788 http://dx.doi.org/10.1080/23802359.2023.2190426 |
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author | Wei, Qian Liu, An-cheng Chen, Chen Lu, Yuan Zhang, Yan Li, Shu-Juan |
author_facet | Wei, Qian Liu, An-cheng Chen, Chen Lu, Yuan Zhang, Yan Li, Shu-Juan |
author_sort | Wei, Qian |
collection | PubMed |
description | Nymphaea atrans belongs to the subgenus Anecphya and displays varied flower colors over successive days. Because of its excellent ornamental characteristics, this species is widely cultivated in waterscape gardens worldwide. Here, we have sequenced the complete chloroplast genome of N. atrans. The whole genome size is 160,990 bp in length with four subregions: large and small single-copy regions of 90,879 and 19,699 bp, respectively, separated by a pair of inverted repeat regions of 25,206 bp each. A total of 126 genes were annotated, including 82 coding genes, eight ribosomal RNAs, and 36 transfer RNAs. The total GC content of the complete genome was 39%. Phylogenetic analysis showed that N. atrans was closely related to N. immutabilis. In this study, we have provided the chloroplast genome of N. atrans as a valuable resource for further phylogenetic analysis of Nymphaea species. |
format | Online Article Text |
id | pubmed-10044148 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-100441482023-03-29 The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae) Wei, Qian Liu, An-cheng Chen, Chen Lu, Yuan Zhang, Yan Li, Shu-Juan Mitochondrial DNA B Resour MitoGenome Announcement Nymphaea atrans belongs to the subgenus Anecphya and displays varied flower colors over successive days. Because of its excellent ornamental characteristics, this species is widely cultivated in waterscape gardens worldwide. Here, we have sequenced the complete chloroplast genome of N. atrans. The whole genome size is 160,990 bp in length with four subregions: large and small single-copy regions of 90,879 and 19,699 bp, respectively, separated by a pair of inverted repeat regions of 25,206 bp each. A total of 126 genes were annotated, including 82 coding genes, eight ribosomal RNAs, and 36 transfer RNAs. The total GC content of the complete genome was 39%. Phylogenetic analysis showed that N. atrans was closely related to N. immutabilis. In this study, we have provided the chloroplast genome of N. atrans as a valuable resource for further phylogenetic analysis of Nymphaea species. Taylor & Francis 2023-03-25 /pmc/articles/PMC10044148/ /pubmed/36998788 http://dx.doi.org/10.1080/23802359.2023.2190426 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | MitoGenome Announcement Wei, Qian Liu, An-cheng Chen, Chen Lu, Yuan Zhang, Yan Li, Shu-Juan The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae) |
title | The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae) |
title_full | The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae) |
title_fullStr | The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae) |
title_full_unstemmed | The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae) |
title_short | The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae) |
title_sort | complete chloroplast genome of nymphaea atrans (surrey wilfrid laurance jacobs, 1992: nymphaeaceae) |
topic | MitoGenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10044148/ https://www.ncbi.nlm.nih.gov/pubmed/36998788 http://dx.doi.org/10.1080/23802359.2023.2190426 |
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