Cargando…

Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images

Despite the proliferation of deep learning techniques for accelerated MRI acquisition and enhanced image reconstruction, the construction of large and diverse MRI datasets continues to pose a barrier to effective clinical translation of these technologies. One major challenge is in collecting the MR...

Descripción completa

Detalles Bibliográficos
Autores principales: Deveshwar, Nikhil, Rajagopal, Abhejit, Sahin, Sule, Shimron, Efrat, Larson, Peder E. Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10045391/
https://www.ncbi.nlm.nih.gov/pubmed/36978749
http://dx.doi.org/10.3390/bioengineering10030358
_version_ 1784913592253939712
author Deveshwar, Nikhil
Rajagopal, Abhejit
Sahin, Sule
Shimron, Efrat
Larson, Peder E. Z.
author_facet Deveshwar, Nikhil
Rajagopal, Abhejit
Sahin, Sule
Shimron, Efrat
Larson, Peder E. Z.
author_sort Deveshwar, Nikhil
collection PubMed
description Despite the proliferation of deep learning techniques for accelerated MRI acquisition and enhanced image reconstruction, the construction of large and diverse MRI datasets continues to pose a barrier to effective clinical translation of these technologies. One major challenge is in collecting the MRI raw data (required for image reconstruction) from clinical scanning, as only magnitude images are typically saved and used for clinical assessment and diagnosis. The image phase and multi-channel RF coil information are not retained when magnitude-only images are saved in clinical imaging archives. Additionally, preprocessing used for data in clinical imaging can lead to biased results. While several groups have begun concerted efforts to collect large amounts of MRI raw data, current databases are limited in the diversity of anatomy, pathology, annotations, and acquisition types they contain. To address this, we present a method for synthesizing realistic MR data from magnitude-only data, allowing for the use of diverse data from clinical imaging archives in advanced MRI reconstruction development. Our method uses a conditional GAN-based framework to generate synthetic phase images from input magnitude images. We then applied ESPIRiT to derive RF coil sensitivity maps from fully sampled real data to generate multi-coil data. The synthetic data generation method was evaluated by comparing image reconstruction results from training Variational Networks either with real data or synthetic data. We demonstrate that the Variational Network trained on synthetic MRI data from our method, consisting of GAN-derived synthetic phase and multi-coil information, outperformed Variational Networks trained on data with synthetic phase generated using current state-of-the-art methods. Additionally, we demonstrate that the Variational Networks trained with synthetic k-space data from our method perform comparably to image reconstruction networks trained on undersampled real k-space data.
format Online
Article
Text
id pubmed-10045391
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-100453912023-03-29 Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images Deveshwar, Nikhil Rajagopal, Abhejit Sahin, Sule Shimron, Efrat Larson, Peder E. Z. Bioengineering (Basel) Article Despite the proliferation of deep learning techniques for accelerated MRI acquisition and enhanced image reconstruction, the construction of large and diverse MRI datasets continues to pose a barrier to effective clinical translation of these technologies. One major challenge is in collecting the MRI raw data (required for image reconstruction) from clinical scanning, as only magnitude images are typically saved and used for clinical assessment and diagnosis. The image phase and multi-channel RF coil information are not retained when magnitude-only images are saved in clinical imaging archives. Additionally, preprocessing used for data in clinical imaging can lead to biased results. While several groups have begun concerted efforts to collect large amounts of MRI raw data, current databases are limited in the diversity of anatomy, pathology, annotations, and acquisition types they contain. To address this, we present a method for synthesizing realistic MR data from magnitude-only data, allowing for the use of diverse data from clinical imaging archives in advanced MRI reconstruction development. Our method uses a conditional GAN-based framework to generate synthetic phase images from input magnitude images. We then applied ESPIRiT to derive RF coil sensitivity maps from fully sampled real data to generate multi-coil data. The synthetic data generation method was evaluated by comparing image reconstruction results from training Variational Networks either with real data or synthetic data. We demonstrate that the Variational Network trained on synthetic MRI data from our method, consisting of GAN-derived synthetic phase and multi-coil information, outperformed Variational Networks trained on data with synthetic phase generated using current state-of-the-art methods. Additionally, we demonstrate that the Variational Networks trained with synthetic k-space data from our method perform comparably to image reconstruction networks trained on undersampled real k-space data. MDPI 2023-03-14 /pmc/articles/PMC10045391/ /pubmed/36978749 http://dx.doi.org/10.3390/bioengineering10030358 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Deveshwar, Nikhil
Rajagopal, Abhejit
Sahin, Sule
Shimron, Efrat
Larson, Peder E. Z.
Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images
title Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images
title_full Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images
title_fullStr Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images
title_full_unstemmed Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images
title_short Synthesizing Complex-Valued Multicoil MRI Data from Magnitude-Only Images
title_sort synthesizing complex-valued multicoil mri data from magnitude-only images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10045391/
https://www.ncbi.nlm.nih.gov/pubmed/36978749
http://dx.doi.org/10.3390/bioengineering10030358
work_keys_str_mv AT deveshwarnikhil synthesizingcomplexvaluedmulticoilmridatafrommagnitudeonlyimages
AT rajagopalabhejit synthesizingcomplexvaluedmulticoilmridatafrommagnitudeonlyimages
AT sahinsule synthesizingcomplexvaluedmulticoilmridatafrommagnitudeonlyimages
AT shimronefrat synthesizingcomplexvaluedmulticoilmridatafrommagnitudeonlyimages
AT larsonpederez synthesizingcomplexvaluedmulticoilmridatafrommagnitudeonlyimages