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GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification

Nuclei segmentation and classification are two basic and essential tasks in computer-aided diagnosis of digital pathology images, and those deep-learning-based methods have achieved significant success. Unfortunately, most of the existing studies accomplish the two tasks by splicing two related neur...

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Autores principales: Zhao, Tengfei, Fu, Chong, Tian, Yunjia, Song, Wei, Sham, Chiu-Wing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10045412/
https://www.ncbi.nlm.nih.gov/pubmed/36978784
http://dx.doi.org/10.3390/bioengineering10030393
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author Zhao, Tengfei
Fu, Chong
Tian, Yunjia
Song, Wei
Sham, Chiu-Wing
author_facet Zhao, Tengfei
Fu, Chong
Tian, Yunjia
Song, Wei
Sham, Chiu-Wing
author_sort Zhao, Tengfei
collection PubMed
description Nuclei segmentation and classification are two basic and essential tasks in computer-aided diagnosis of digital pathology images, and those deep-learning-based methods have achieved significant success. Unfortunately, most of the existing studies accomplish the two tasks by splicing two related neural networks directly, resulting in repetitive computation efforts and a redundant-and-large neural network. Thus, this paper proposes a lightweight deep learning framework (GSN-HVNET) with an encoder–decoder structure for simultaneous segmentation and classification of nuclei. The decoder consists of three branches outputting the semantic segmentation of nuclei, the horizontal and vertical (HV) distances of nuclei pixels to their mass centers, and the class of each nucleus, respectively. The instance segmentation results are obtained by combing the outputs of the first and second branches. To reduce the computational cost and improve the network stability under small batch sizes, we propose two newly designed blocks, Residual-Ghost-SN (RGS) and Dense-Ghost-SN (DGS). Furthermore, considering the practical usage in pathological diagnosis, we redefine the classification principle of the CoNSeP dataset. Experimental results demonstrate that the proposed model outperforms other state-of-the-art models in terms of segmentation and classification accuracy by a significant margin while maintaining high computational efficiency.
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spelling pubmed-100454122023-03-29 GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification Zhao, Tengfei Fu, Chong Tian, Yunjia Song, Wei Sham, Chiu-Wing Bioengineering (Basel) Article Nuclei segmentation and classification are two basic and essential tasks in computer-aided diagnosis of digital pathology images, and those deep-learning-based methods have achieved significant success. Unfortunately, most of the existing studies accomplish the two tasks by splicing two related neural networks directly, resulting in repetitive computation efforts and a redundant-and-large neural network. Thus, this paper proposes a lightweight deep learning framework (GSN-HVNET) with an encoder–decoder structure for simultaneous segmentation and classification of nuclei. The decoder consists of three branches outputting the semantic segmentation of nuclei, the horizontal and vertical (HV) distances of nuclei pixels to their mass centers, and the class of each nucleus, respectively. The instance segmentation results are obtained by combing the outputs of the first and second branches. To reduce the computational cost and improve the network stability under small batch sizes, we propose two newly designed blocks, Residual-Ghost-SN (RGS) and Dense-Ghost-SN (DGS). Furthermore, considering the practical usage in pathological diagnosis, we redefine the classification principle of the CoNSeP dataset. Experimental results demonstrate that the proposed model outperforms other state-of-the-art models in terms of segmentation and classification accuracy by a significant margin while maintaining high computational efficiency. MDPI 2023-03-22 /pmc/articles/PMC10045412/ /pubmed/36978784 http://dx.doi.org/10.3390/bioengineering10030393 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhao, Tengfei
Fu, Chong
Tian, Yunjia
Song, Wei
Sham, Chiu-Wing
GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification
title GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification
title_full GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification
title_fullStr GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification
title_full_unstemmed GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification
title_short GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification
title_sort gsn-hvnet: a lightweight, multi-task deep learning framework for nuclei segmentation and classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10045412/
https://www.ncbi.nlm.nih.gov/pubmed/36978784
http://dx.doi.org/10.3390/bioengineering10030393
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