Cargando…

Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification

Chronic obstructive pulmonary disease (COPD) is a heterogeneous and complex progressive inflammatory disease. Necroptosis is a newly identified type of programmed cell death. However, the role of necroptosis in COPD is unclear. This study aimed to identify necroptosis-related genes in COPD and explo...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Yingxi, Su, Xin, Yin, Yan, Wang, Qiuyue
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10046193/
https://www.ncbi.nlm.nih.gov/pubmed/36979417
http://dx.doi.org/10.3390/biom13030482
_version_ 1785013607643217920
author Wang, Yingxi
Su, Xin
Yin, Yan
Wang, Qiuyue
author_facet Wang, Yingxi
Su, Xin
Yin, Yan
Wang, Qiuyue
author_sort Wang, Yingxi
collection PubMed
description Chronic obstructive pulmonary disease (COPD) is a heterogeneous and complex progressive inflammatory disease. Necroptosis is a newly identified type of programmed cell death. However, the role of necroptosis in COPD is unclear. This study aimed to identify necroptosis-related genes in COPD and explore the roles of necroptosis and immune infiltration through bioinformatics. The analysis identified 49 differentially expressed necroptosis-related genes that were primarily engaged in inflammatory immune response pathways. The infiltration of CD8+ T cells and M2 macrophages in COPD lung tissue was relatively reduced, whereas that of M0 macrophages was increased. We identified 10 necroptosis-related hub genes significantly associated with infiltrated immune cells. Furthermore, 7 hub genes, CASP8, IL1B, RIPK1, MLKL, XIAP, TNFRSF1A, and CFLAR, were validated using an external dataset and experimental mice. CFLAR was considered to have the best COPD-diagnosing capability. TF and miRNA interactions with common hub genes were identified. Several related potentially therapeutic molecules for COPD were also identified. The present findings suggest that necroptosis occurs in COPD pathogenesis and is correlated with immune cell infiltration, which indicates that necroptosis may participate in the development of COPD by interacting with the immune response.
format Online
Article
Text
id pubmed-10046193
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-100461932023-03-29 Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification Wang, Yingxi Su, Xin Yin, Yan Wang, Qiuyue Biomolecules Article Chronic obstructive pulmonary disease (COPD) is a heterogeneous and complex progressive inflammatory disease. Necroptosis is a newly identified type of programmed cell death. However, the role of necroptosis in COPD is unclear. This study aimed to identify necroptosis-related genes in COPD and explore the roles of necroptosis and immune infiltration through bioinformatics. The analysis identified 49 differentially expressed necroptosis-related genes that were primarily engaged in inflammatory immune response pathways. The infiltration of CD8+ T cells and M2 macrophages in COPD lung tissue was relatively reduced, whereas that of M0 macrophages was increased. We identified 10 necroptosis-related hub genes significantly associated with infiltrated immune cells. Furthermore, 7 hub genes, CASP8, IL1B, RIPK1, MLKL, XIAP, TNFRSF1A, and CFLAR, were validated using an external dataset and experimental mice. CFLAR was considered to have the best COPD-diagnosing capability. TF and miRNA interactions with common hub genes were identified. Several related potentially therapeutic molecules for COPD were also identified. The present findings suggest that necroptosis occurs in COPD pathogenesis and is correlated with immune cell infiltration, which indicates that necroptosis may participate in the development of COPD by interacting with the immune response. MDPI 2023-03-06 /pmc/articles/PMC10046193/ /pubmed/36979417 http://dx.doi.org/10.3390/biom13030482 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Yingxi
Su, Xin
Yin, Yan
Wang, Qiuyue
Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification
title Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification
title_full Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification
title_fullStr Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification
title_full_unstemmed Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification
title_short Identification and Analysis of Necroptosis-Related Genes in COPD by Bioinformatics and Experimental Verification
title_sort identification and analysis of necroptosis-related genes in copd by bioinformatics and experimental verification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10046193/
https://www.ncbi.nlm.nih.gov/pubmed/36979417
http://dx.doi.org/10.3390/biom13030482
work_keys_str_mv AT wangyingxi identificationandanalysisofnecroptosisrelatedgenesincopdbybioinformaticsandexperimentalverification
AT suxin identificationandanalysisofnecroptosisrelatedgenesincopdbybioinformaticsandexperimentalverification
AT yinyan identificationandanalysisofnecroptosisrelatedgenesincopdbybioinformaticsandexperimentalverification
AT wangqiuyue identificationandanalysisofnecroptosisrelatedgenesincopdbybioinformaticsandexperimentalverification