Cargando…

The RNA-Seq data analysis shows how the ontogenesis defines aging

This paper presents a global statistical analysis of the RNA-Seq results of the entire Mus musculus genome. We explain aging by a gradual redistribution of limited resources between two major tasks of the organism: its self-sustenance based on the function of the housekeeping gene group (HG) and fun...

Descripción completa

Detalles Bibliográficos
Autores principales: Salnikov, Lev, Goldberg, Saveli, Rijhwani, Heena, Shi, Yuran, Pinsky, Eugene
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10046809/
https://www.ncbi.nlm.nih.gov/pubmed/36999000
http://dx.doi.org/10.3389/fragi.2023.1143334
_version_ 1785013766053691392
author Salnikov, Lev
Goldberg, Saveli
Rijhwani, Heena
Shi, Yuran
Pinsky, Eugene
author_facet Salnikov, Lev
Goldberg, Saveli
Rijhwani, Heena
Shi, Yuran
Pinsky, Eugene
author_sort Salnikov, Lev
collection PubMed
description This paper presents a global statistical analysis of the RNA-Seq results of the entire Mus musculus genome. We explain aging by a gradual redistribution of limited resources between two major tasks of the organism: its self-sustenance based on the function of the housekeeping gene group (HG) and functional differentiation provided by the integrative gene group (IntG). All known disorders associated with aging are the result of a deficiency in the repair processes provided by the cellular infrastructure. Understanding exactly how this deficiency arises is our primary goal. Analysis of RNA production data of 35,630 genes, from which 5,101 were identified as HG genes, showed that RNA production levels in the HG and IntG genes had statistically significant differences (p-value <0.0001) throughout the entire observation period. In the reproductive period of life, which has the lowest actual mortality risk for Mus musculus, changes in the age dynamics of RNA production occur. The statistically significant dynamics of the decrease of RNA production in the HG group in contrast to the IntG group was determined (p-value = 0.0045). The trend toward significant shift in the HG/IntG ratio occurs after the end of the reproductive period, coinciding with the beginning of the mortality rate increase in Mus musculus indirectly supports our hypothesis. The results demonstrate a different orientation of the impact of ontogenesis regulatory mechanisms on the groups of genes representing cell infrastructures and their organismal functions, making the chosen direction promising for further research and understanding the mechanisms of aging.
format Online
Article
Text
id pubmed-10046809
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-100468092023-03-29 The RNA-Seq data analysis shows how the ontogenesis defines aging Salnikov, Lev Goldberg, Saveli Rijhwani, Heena Shi, Yuran Pinsky, Eugene Front Aging Aging This paper presents a global statistical analysis of the RNA-Seq results of the entire Mus musculus genome. We explain aging by a gradual redistribution of limited resources between two major tasks of the organism: its self-sustenance based on the function of the housekeeping gene group (HG) and functional differentiation provided by the integrative gene group (IntG). All known disorders associated with aging are the result of a deficiency in the repair processes provided by the cellular infrastructure. Understanding exactly how this deficiency arises is our primary goal. Analysis of RNA production data of 35,630 genes, from which 5,101 were identified as HG genes, showed that RNA production levels in the HG and IntG genes had statistically significant differences (p-value <0.0001) throughout the entire observation period. In the reproductive period of life, which has the lowest actual mortality risk for Mus musculus, changes in the age dynamics of RNA production occur. The statistically significant dynamics of the decrease of RNA production in the HG group in contrast to the IntG group was determined (p-value = 0.0045). The trend toward significant shift in the HG/IntG ratio occurs after the end of the reproductive period, coinciding with the beginning of the mortality rate increase in Mus musculus indirectly supports our hypothesis. The results demonstrate a different orientation of the impact of ontogenesis regulatory mechanisms on the groups of genes representing cell infrastructures and their organismal functions, making the chosen direction promising for further research and understanding the mechanisms of aging. Frontiers Media S.A. 2023-03-14 /pmc/articles/PMC10046809/ /pubmed/36999000 http://dx.doi.org/10.3389/fragi.2023.1143334 Text en Copyright © 2023 Salnikov, Goldberg, Rijhwani, Shi and Pinsky. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Aging
Salnikov, Lev
Goldberg, Saveli
Rijhwani, Heena
Shi, Yuran
Pinsky, Eugene
The RNA-Seq data analysis shows how the ontogenesis defines aging
title The RNA-Seq data analysis shows how the ontogenesis defines aging
title_full The RNA-Seq data analysis shows how the ontogenesis defines aging
title_fullStr The RNA-Seq data analysis shows how the ontogenesis defines aging
title_full_unstemmed The RNA-Seq data analysis shows how the ontogenesis defines aging
title_short The RNA-Seq data analysis shows how the ontogenesis defines aging
title_sort rna-seq data analysis shows how the ontogenesis defines aging
topic Aging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10046809/
https://www.ncbi.nlm.nih.gov/pubmed/36999000
http://dx.doi.org/10.3389/fragi.2023.1143334
work_keys_str_mv AT salnikovlev thernaseqdataanalysisshowshowtheontogenesisdefinesaging
AT goldbergsaveli thernaseqdataanalysisshowshowtheontogenesisdefinesaging
AT rijhwaniheena thernaseqdataanalysisshowshowtheontogenesisdefinesaging
AT shiyuran thernaseqdataanalysisshowshowtheontogenesisdefinesaging
AT pinskyeugene thernaseqdataanalysisshowshowtheontogenesisdefinesaging
AT salnikovlev rnaseqdataanalysisshowshowtheontogenesisdefinesaging
AT goldbergsaveli rnaseqdataanalysisshowshowtheontogenesisdefinesaging
AT rijhwaniheena rnaseqdataanalysisshowshowtheontogenesisdefinesaging
AT shiyuran rnaseqdataanalysisshowshowtheontogenesisdefinesaging
AT pinskyeugene rnaseqdataanalysisshowshowtheontogenesisdefinesaging