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Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes

Glioma is the primary tumor with the highest incidence and the worst prognosis in the human central nervous system. Epithelial–mesenchymal transition (EMT) and immune responses are two crucial processes that contribute to it having the worst prognosis. However, a comprehensive correlation between th...

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Detalles Bibliográficos
Autores principales: Ren, Changyuan, Chang, Xin, Li, Shouwei, Yan, Changxiang, Fu, Xiaojun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10046881/
https://www.ncbi.nlm.nih.gov/pubmed/36979257
http://dx.doi.org/10.3390/brainsci13030447
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author Ren, Changyuan
Chang, Xin
Li, Shouwei
Yan, Changxiang
Fu, Xiaojun
author_facet Ren, Changyuan
Chang, Xin
Li, Shouwei
Yan, Changxiang
Fu, Xiaojun
author_sort Ren, Changyuan
collection PubMed
description Glioma is the primary tumor with the highest incidence and the worst prognosis in the human central nervous system. Epithelial–mesenchymal transition (EMT) and immune responses are two crucial processes that contribute to it having the worst prognosis. However, a comprehensive correlation between these two processes remains elusive. The mRNA expression profiles and corresponding clinical data of patients with glioma were downloaded from public databases. EMT-related genes were collected and provided in the dbEMT database. Risk scores, Lasso regression, and enrichment analysis were conducted for functional validation. In our study, we used unsupervised clustering of EMT gene expression profiles to classify gliomas into two subtypes. We assessed the reliability of this classification system by testing it in three independent cohorts. Each subtype had different clinical and immune system characteristics. The study suggests a possible link between EMT and immune responses in gliomas.
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spelling pubmed-100468812023-03-29 Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes Ren, Changyuan Chang, Xin Li, Shouwei Yan, Changxiang Fu, Xiaojun Brain Sci Article Glioma is the primary tumor with the highest incidence and the worst prognosis in the human central nervous system. Epithelial–mesenchymal transition (EMT) and immune responses are two crucial processes that contribute to it having the worst prognosis. However, a comprehensive correlation between these two processes remains elusive. The mRNA expression profiles and corresponding clinical data of patients with glioma were downloaded from public databases. EMT-related genes were collected and provided in the dbEMT database. Risk scores, Lasso regression, and enrichment analysis were conducted for functional validation. In our study, we used unsupervised clustering of EMT gene expression profiles to classify gliomas into two subtypes. We assessed the reliability of this classification system by testing it in three independent cohorts. Each subtype had different clinical and immune system characteristics. The study suggests a possible link between EMT and immune responses in gliomas. MDPI 2023-03-05 /pmc/articles/PMC10046881/ /pubmed/36979257 http://dx.doi.org/10.3390/brainsci13030447 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ren, Changyuan
Chang, Xin
Li, Shouwei
Yan, Changxiang
Fu, Xiaojun
Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes
title Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes
title_full Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes
title_fullStr Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes
title_full_unstemmed Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes
title_short Epithelial–Mesenchymal Transition Expression Profile Stratifies Human Glioma into Two Distinct Tumor-Immune Subtypes
title_sort epithelial–mesenchymal transition expression profile stratifies human glioma into two distinct tumor-immune subtypes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10046881/
https://www.ncbi.nlm.nih.gov/pubmed/36979257
http://dx.doi.org/10.3390/brainsci13030447
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