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Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD
Background: The development and testing of a deep learning (DL)-based approach for detection and measurement of regions of Ellipsoid Zone (EZ) At-Risk to study progression in nonexudative age-related macular degeneration (AMD). Methods: Used in DL model training and testing were 341 subjects with no...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047385/ https://www.ncbi.nlm.nih.gov/pubmed/36980486 http://dx.doi.org/10.3390/diagnostics13061178 |
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author | Kalra, Gagan Cetin, Hasan Whitney, Jon Yordi, Sari Cakir, Yavuz McConville, Conor Whitmore, Victoria Bonnay, Michelle Reese, Jamie L. Srivastava, Sunil K. Ehlers, Justis P. |
author_facet | Kalra, Gagan Cetin, Hasan Whitney, Jon Yordi, Sari Cakir, Yavuz McConville, Conor Whitmore, Victoria Bonnay, Michelle Reese, Jamie L. Srivastava, Sunil K. Ehlers, Justis P. |
author_sort | Kalra, Gagan |
collection | PubMed |
description | Background: The development and testing of a deep learning (DL)-based approach for detection and measurement of regions of Ellipsoid Zone (EZ) At-Risk to study progression in nonexudative age-related macular degeneration (AMD). Methods: Used in DL model training and testing were 341 subjects with nonexudative AMD with or without geographic atrophy (GA). An independent dataset of 120 subjects were used for testing model performance for prediction of GA progression. Accuracy, specificity, sensitivity, and intraclass correlation coefficient (ICC) for DL-based EZ At-Risk percentage area measurement was calculated. Random forest-based feature ranking of EZ At-Risk was compared to previously validated quantitative OCT-based biomarkers. Results: The model achieved a detection accuracy of 99% (sensitivity = 99%; specificity = 100%) for EZ At-Risk. Automatic EZ At-Risk measurement achieved an accuracy of 90% (sensitivity = 90%; specificity = 84%) and the ICC compared to ground truth was high (0.83). In the independent dataset, higher baseline mean EZ At-Risk correlated with higher progression to GA at year 5 (p < 0.001). EZ At-Risk was a top ranked feature in the random forest assessment for GA prediction. Conclusions: This report describes a novel high performance DL-based model for the detection and measurement of EZ At-Risk. This biomarker showed promising results in predicting progression in nonexudative AMD patients. |
format | Online Article Text |
id | pubmed-10047385 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100473852023-03-29 Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD Kalra, Gagan Cetin, Hasan Whitney, Jon Yordi, Sari Cakir, Yavuz McConville, Conor Whitmore, Victoria Bonnay, Michelle Reese, Jamie L. Srivastava, Sunil K. Ehlers, Justis P. Diagnostics (Basel) Article Background: The development and testing of a deep learning (DL)-based approach for detection and measurement of regions of Ellipsoid Zone (EZ) At-Risk to study progression in nonexudative age-related macular degeneration (AMD). Methods: Used in DL model training and testing were 341 subjects with nonexudative AMD with or without geographic atrophy (GA). An independent dataset of 120 subjects were used for testing model performance for prediction of GA progression. Accuracy, specificity, sensitivity, and intraclass correlation coefficient (ICC) for DL-based EZ At-Risk percentage area measurement was calculated. Random forest-based feature ranking of EZ At-Risk was compared to previously validated quantitative OCT-based biomarkers. Results: The model achieved a detection accuracy of 99% (sensitivity = 99%; specificity = 100%) for EZ At-Risk. Automatic EZ At-Risk measurement achieved an accuracy of 90% (sensitivity = 90%; specificity = 84%) and the ICC compared to ground truth was high (0.83). In the independent dataset, higher baseline mean EZ At-Risk correlated with higher progression to GA at year 5 (p < 0.001). EZ At-Risk was a top ranked feature in the random forest assessment for GA prediction. Conclusions: This report describes a novel high performance DL-based model for the detection and measurement of EZ At-Risk. This biomarker showed promising results in predicting progression in nonexudative AMD patients. MDPI 2023-03-20 /pmc/articles/PMC10047385/ /pubmed/36980486 http://dx.doi.org/10.3390/diagnostics13061178 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kalra, Gagan Cetin, Hasan Whitney, Jon Yordi, Sari Cakir, Yavuz McConville, Conor Whitmore, Victoria Bonnay, Michelle Reese, Jamie L. Srivastava, Sunil K. Ehlers, Justis P. Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD |
title | Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD |
title_full | Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD |
title_fullStr | Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD |
title_full_unstemmed | Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD |
title_short | Automated Identification and Segmentation of Ellipsoid Zone At-Risk Using Deep Learning on SD-OCT for Predicting Progression in Dry AMD |
title_sort | automated identification and segmentation of ellipsoid zone at-risk using deep learning on sd-oct for predicting progression in dry amd |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047385/ https://www.ncbi.nlm.nih.gov/pubmed/36980486 http://dx.doi.org/10.3390/diagnostics13061178 |
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