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A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection

Narrow band imaging is an established non-invasive tool used for the early detection of laryngeal cancer in surveillance examinations. Most images produced from the examination are useless, such as blurred, specular reflection, and underexposed. Removing the uninformative frames is vital to improve...

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Autores principales: Zhang, Lei, Wu, Linjie, Wei, Liangzhuang, Wu, Haitao, Lin, Yandan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047422/
https://www.ncbi.nlm.nih.gov/pubmed/36980459
http://dx.doi.org/10.3390/diagnostics13061151
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author Zhang, Lei
Wu, Linjie
Wei, Liangzhuang
Wu, Haitao
Lin, Yandan
author_facet Zhang, Lei
Wu, Linjie
Wei, Liangzhuang
Wu, Haitao
Lin, Yandan
author_sort Zhang, Lei
collection PubMed
description Narrow band imaging is an established non-invasive tool used for the early detection of laryngeal cancer in surveillance examinations. Most images produced from the examination are useless, such as blurred, specular reflection, and underexposed. Removing the uninformative frames is vital to improve detection accuracy and speed up computer-aided diagnosis. It often takes a lot of time for the physician to manually inspect the informative frames. This issue is commonly addressed by a classifier with task-specific categories of the uninformative frames. However, the definition of the uninformative categories is ambiguous, and tedious labeling still cannot be avoided. Here, we show that a novel unsupervised scheme is comparable to the current benchmarks on the dataset of NBI-InfFrames. We extract feature embedding using a vanilla neural network (VGG16) and introduce a new dimensionality reduction method called UMAP that distinguishes the feature embedding in the lower-dimensional space. Along with the proposed automatic cluster labeling algorithm and cost function in Bayesian optimization, the proposed method coupled with UMAP achieves state-of-the-art performance. It outperforms the baseline by 12% absolute. The overall median recall of the proposed method is currently the highest, 96%. Our results demonstrate the effectiveness of the proposed scheme and the robustness of detecting the informative frames. It also suggests the patterns embedded in the data help develop flexible algorithms that do not require manual labeling.
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spelling pubmed-100474222023-03-29 A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection Zhang, Lei Wu, Linjie Wei, Liangzhuang Wu, Haitao Lin, Yandan Diagnostics (Basel) Article Narrow band imaging is an established non-invasive tool used for the early detection of laryngeal cancer in surveillance examinations. Most images produced from the examination are useless, such as blurred, specular reflection, and underexposed. Removing the uninformative frames is vital to improve detection accuracy and speed up computer-aided diagnosis. It often takes a lot of time for the physician to manually inspect the informative frames. This issue is commonly addressed by a classifier with task-specific categories of the uninformative frames. However, the definition of the uninformative categories is ambiguous, and tedious labeling still cannot be avoided. Here, we show that a novel unsupervised scheme is comparable to the current benchmarks on the dataset of NBI-InfFrames. We extract feature embedding using a vanilla neural network (VGG16) and introduce a new dimensionality reduction method called UMAP that distinguishes the feature embedding in the lower-dimensional space. Along with the proposed automatic cluster labeling algorithm and cost function in Bayesian optimization, the proposed method coupled with UMAP achieves state-of-the-art performance. It outperforms the baseline by 12% absolute. The overall median recall of the proposed method is currently the highest, 96%. Our results demonstrate the effectiveness of the proposed scheme and the robustness of detecting the informative frames. It also suggests the patterns embedded in the data help develop flexible algorithms that do not require manual labeling. MDPI 2023-03-17 /pmc/articles/PMC10047422/ /pubmed/36980459 http://dx.doi.org/10.3390/diagnostics13061151 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Lei
Wu, Linjie
Wei, Liangzhuang
Wu, Haitao
Lin, Yandan
A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection
title A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection
title_full A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection
title_fullStr A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection
title_full_unstemmed A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection
title_short A Novel Framework of Manifold Learning Cascade-Clustering for the Informative Frame Selection
title_sort novel framework of manifold learning cascade-clustering for the informative frame selection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047422/
https://www.ncbi.nlm.nih.gov/pubmed/36980459
http://dx.doi.org/10.3390/diagnostics13061151
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