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Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection

Domain shift is one of the key challenges affecting reliability in medical imaging-based machine learning predictions. It is of significant importance to investigate this issue to gain insights into its characteristics toward determining controllable parameters to minimize its impact. In this paper,...

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Autores principales: Xue, Zhiyun, Yang, Feng, Rajaraman, Sivaramakrishnan, Zamzmi, Ghada, Antani, Sameer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047562/
https://www.ncbi.nlm.nih.gov/pubmed/36980375
http://dx.doi.org/10.3390/diagnostics13061068
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author Xue, Zhiyun
Yang, Feng
Rajaraman, Sivaramakrishnan
Zamzmi, Ghada
Antani, Sameer
author_facet Xue, Zhiyun
Yang, Feng
Rajaraman, Sivaramakrishnan
Zamzmi, Ghada
Antani, Sameer
author_sort Xue, Zhiyun
collection PubMed
description Domain shift is one of the key challenges affecting reliability in medical imaging-based machine learning predictions. It is of significant importance to investigate this issue to gain insights into its characteristics toward determining controllable parameters to minimize its impact. In this paper, we report our efforts on studying and analyzing domain shift in lung region detection in chest radiographs. We used five chest X-ray datasets, collected from different sources, which have manual markings of lung boundaries in order to conduct extensive experiments toward this goal. We compared the characteristics of these datasets from three aspects: information obtained from metadata or an image header, image appearance, and features extracted from a pretrained model. We carried out experiments to evaluate and compare model performances within each dataset and across datasets in four scenarios using different combinations of datasets. We proposed a new feature visualization method to provide explanations for the applied object detection network on the obtained quantitative results. We also examined chest X-ray modality-specific initialization, catastrophic forgetting, and model repeatability. We believe the observations and discussions presented in this work could help to shed some light on the importance of the analysis of training data for medical imaging machine learning research, and could provide valuable guidance for domain shift analysis.
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spelling pubmed-100475622023-03-29 Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection Xue, Zhiyun Yang, Feng Rajaraman, Sivaramakrishnan Zamzmi, Ghada Antani, Sameer Diagnostics (Basel) Article Domain shift is one of the key challenges affecting reliability in medical imaging-based machine learning predictions. It is of significant importance to investigate this issue to gain insights into its characteristics toward determining controllable parameters to minimize its impact. In this paper, we report our efforts on studying and analyzing domain shift in lung region detection in chest radiographs. We used five chest X-ray datasets, collected from different sources, which have manual markings of lung boundaries in order to conduct extensive experiments toward this goal. We compared the characteristics of these datasets from three aspects: information obtained from metadata or an image header, image appearance, and features extracted from a pretrained model. We carried out experiments to evaluate and compare model performances within each dataset and across datasets in four scenarios using different combinations of datasets. We proposed a new feature visualization method to provide explanations for the applied object detection network on the obtained quantitative results. We also examined chest X-ray modality-specific initialization, catastrophic forgetting, and model repeatability. We believe the observations and discussions presented in this work could help to shed some light on the importance of the analysis of training data for medical imaging machine learning research, and could provide valuable guidance for domain shift analysis. MDPI 2023-03-11 /pmc/articles/PMC10047562/ /pubmed/36980375 http://dx.doi.org/10.3390/diagnostics13061068 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xue, Zhiyun
Yang, Feng
Rajaraman, Sivaramakrishnan
Zamzmi, Ghada
Antani, Sameer
Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection
title Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection
title_full Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection
title_fullStr Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection
title_full_unstemmed Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection
title_short Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection
title_sort cross dataset analysis of domain shift in cxr lung region detection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047562/
https://www.ncbi.nlm.nih.gov/pubmed/36980375
http://dx.doi.org/10.3390/diagnostics13061068
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