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Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection
Domain shift is one of the key challenges affecting reliability in medical imaging-based machine learning predictions. It is of significant importance to investigate this issue to gain insights into its characteristics toward determining controllable parameters to minimize its impact. In this paper,...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047562/ https://www.ncbi.nlm.nih.gov/pubmed/36980375 http://dx.doi.org/10.3390/diagnostics13061068 |
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author | Xue, Zhiyun Yang, Feng Rajaraman, Sivaramakrishnan Zamzmi, Ghada Antani, Sameer |
author_facet | Xue, Zhiyun Yang, Feng Rajaraman, Sivaramakrishnan Zamzmi, Ghada Antani, Sameer |
author_sort | Xue, Zhiyun |
collection | PubMed |
description | Domain shift is one of the key challenges affecting reliability in medical imaging-based machine learning predictions. It is of significant importance to investigate this issue to gain insights into its characteristics toward determining controllable parameters to minimize its impact. In this paper, we report our efforts on studying and analyzing domain shift in lung region detection in chest radiographs. We used five chest X-ray datasets, collected from different sources, which have manual markings of lung boundaries in order to conduct extensive experiments toward this goal. We compared the characteristics of these datasets from three aspects: information obtained from metadata or an image header, image appearance, and features extracted from a pretrained model. We carried out experiments to evaluate and compare model performances within each dataset and across datasets in four scenarios using different combinations of datasets. We proposed a new feature visualization method to provide explanations for the applied object detection network on the obtained quantitative results. We also examined chest X-ray modality-specific initialization, catastrophic forgetting, and model repeatability. We believe the observations and discussions presented in this work could help to shed some light on the importance of the analysis of training data for medical imaging machine learning research, and could provide valuable guidance for domain shift analysis. |
format | Online Article Text |
id | pubmed-10047562 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100475622023-03-29 Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection Xue, Zhiyun Yang, Feng Rajaraman, Sivaramakrishnan Zamzmi, Ghada Antani, Sameer Diagnostics (Basel) Article Domain shift is one of the key challenges affecting reliability in medical imaging-based machine learning predictions. It is of significant importance to investigate this issue to gain insights into its characteristics toward determining controllable parameters to minimize its impact. In this paper, we report our efforts on studying and analyzing domain shift in lung region detection in chest radiographs. We used five chest X-ray datasets, collected from different sources, which have manual markings of lung boundaries in order to conduct extensive experiments toward this goal. We compared the characteristics of these datasets from three aspects: information obtained from metadata or an image header, image appearance, and features extracted from a pretrained model. We carried out experiments to evaluate and compare model performances within each dataset and across datasets in four scenarios using different combinations of datasets. We proposed a new feature visualization method to provide explanations for the applied object detection network on the obtained quantitative results. We also examined chest X-ray modality-specific initialization, catastrophic forgetting, and model repeatability. We believe the observations and discussions presented in this work could help to shed some light on the importance of the analysis of training data for medical imaging machine learning research, and could provide valuable guidance for domain shift analysis. MDPI 2023-03-11 /pmc/articles/PMC10047562/ /pubmed/36980375 http://dx.doi.org/10.3390/diagnostics13061068 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xue, Zhiyun Yang, Feng Rajaraman, Sivaramakrishnan Zamzmi, Ghada Antani, Sameer Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection |
title | Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection |
title_full | Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection |
title_fullStr | Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection |
title_full_unstemmed | Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection |
title_short | Cross Dataset Analysis of Domain Shift in CXR Lung Region Detection |
title_sort | cross dataset analysis of domain shift in cxr lung region detection |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10047562/ https://www.ncbi.nlm.nih.gov/pubmed/36980375 http://dx.doi.org/10.3390/diagnostics13061068 |
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