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Satellite DNAs—From Localized to Highly Dispersed Genome Components

According to the established classical view, satellite DNAs are defined as abundant non-coding DNA sequences repeated in tandem that build long arrays located in heterochromatin. Advances in sequencing methodologies and development of specialized bioinformatics tools enabled defining a collection of...

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Detalles Bibliográficos
Autores principales: Šatović-Vukšić, Eva, Plohl, Miroslav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048060/
https://www.ncbi.nlm.nih.gov/pubmed/36981013
http://dx.doi.org/10.3390/genes14030742
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author Šatović-Vukšić, Eva
Plohl, Miroslav
author_facet Šatović-Vukšić, Eva
Plohl, Miroslav
author_sort Šatović-Vukšić, Eva
collection PubMed
description According to the established classical view, satellite DNAs are defined as abundant non-coding DNA sequences repeated in tandem that build long arrays located in heterochromatin. Advances in sequencing methodologies and development of specialized bioinformatics tools enabled defining a collection of all repetitive DNAs and satellite DNAs in a genome, the repeatome and the satellitome, respectively, as well as their reliable annotation on sequenced genomes. Supported by various non-model species included in recent studies, the patterns of satellite DNAs and satellitomes as a whole showed much more diversity and complexity than initially thought. Differences are not only in number and abundance of satellite DNAs but also in their distribution across the genome, array length, interspersion patterns, association with transposable elements, localization in heterochromatin and/or in euchromatin. In this review, we compare characteristic organizational features of satellite DNAs and satellitomes across different animal and plant species in order to summarize organizational forms and evolutionary processes that may lead to satellitomes’ diversity and revisit some basic notions regarding repetitive DNA landscapes in genomes.
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spelling pubmed-100480602023-03-29 Satellite DNAs—From Localized to Highly Dispersed Genome Components Šatović-Vukšić, Eva Plohl, Miroslav Genes (Basel) Review According to the established classical view, satellite DNAs are defined as abundant non-coding DNA sequences repeated in tandem that build long arrays located in heterochromatin. Advances in sequencing methodologies and development of specialized bioinformatics tools enabled defining a collection of all repetitive DNAs and satellite DNAs in a genome, the repeatome and the satellitome, respectively, as well as their reliable annotation on sequenced genomes. Supported by various non-model species included in recent studies, the patterns of satellite DNAs and satellitomes as a whole showed much more diversity and complexity than initially thought. Differences are not only in number and abundance of satellite DNAs but also in their distribution across the genome, array length, interspersion patterns, association with transposable elements, localization in heterochromatin and/or in euchromatin. In this review, we compare characteristic organizational features of satellite DNAs and satellitomes across different animal and plant species in order to summarize organizational forms and evolutionary processes that may lead to satellitomes’ diversity and revisit some basic notions regarding repetitive DNA landscapes in genomes. MDPI 2023-03-17 /pmc/articles/PMC10048060/ /pubmed/36981013 http://dx.doi.org/10.3390/genes14030742 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Šatović-Vukšić, Eva
Plohl, Miroslav
Satellite DNAs—From Localized to Highly Dispersed Genome Components
title Satellite DNAs—From Localized to Highly Dispersed Genome Components
title_full Satellite DNAs—From Localized to Highly Dispersed Genome Components
title_fullStr Satellite DNAs—From Localized to Highly Dispersed Genome Components
title_full_unstemmed Satellite DNAs—From Localized to Highly Dispersed Genome Components
title_short Satellite DNAs—From Localized to Highly Dispersed Genome Components
title_sort satellite dnas—from localized to highly dispersed genome components
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048060/
https://www.ncbi.nlm.nih.gov/pubmed/36981013
http://dx.doi.org/10.3390/genes14030742
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