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Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy

The present study aimed to summarize and validate the genomic association signals for diabetic retinopathy (DR), proliferative DR, and diabetic macular edema/diabetic maculopathy. A systematic search of the genome-wide association study (GWAS) catalog and PubMed/MELINE databases was conducted to cur...

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Autores principales: Yu, Xinting, Rong, Shisong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048213/
https://www.ncbi.nlm.nih.gov/pubmed/36980925
http://dx.doi.org/10.3390/genes14030653
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author Yu, Xinting
Rong, Shisong
author_facet Yu, Xinting
Rong, Shisong
author_sort Yu, Xinting
collection PubMed
description The present study aimed to summarize and validate the genomic association signals for diabetic retinopathy (DR), proliferative DR, and diabetic macular edema/diabetic maculopathy. A systematic search of the genome-wide association study (GWAS) catalog and PubMed/MELINE databases was conducted to curate a comprehensive list of significant GWAS discoveries. The top signals were then subjected to meta-analysis using established protocols. The results indicate the need for improved consensus among DR GWASs, highlighting the importance of validation efforts. A subsequent meta-analysis confirmed the association of two SNPs, rs4462262 (ZWINT-MRPS35P3) (odds ratio = 1.38, p = 0.001) and rs7903146 (TCF7L2) (odd ratio = 1.30, p < 0.001), with DR in independent populations, strengthening the evidence of their true association. We also compiled a list of candidate SNPs for further validation. This study highlights the importance of consistent validation and replication efforts in the field of DR genetics. The two identified gene loci warrant further functional investigation to understand their role in DR pathogenesis.
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spelling pubmed-100482132023-03-29 Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy Yu, Xinting Rong, Shisong Genes (Basel) Article The present study aimed to summarize and validate the genomic association signals for diabetic retinopathy (DR), proliferative DR, and diabetic macular edema/diabetic maculopathy. A systematic search of the genome-wide association study (GWAS) catalog and PubMed/MELINE databases was conducted to curate a comprehensive list of significant GWAS discoveries. The top signals were then subjected to meta-analysis using established protocols. The results indicate the need for improved consensus among DR GWASs, highlighting the importance of validation efforts. A subsequent meta-analysis confirmed the association of two SNPs, rs4462262 (ZWINT-MRPS35P3) (odds ratio = 1.38, p = 0.001) and rs7903146 (TCF7L2) (odd ratio = 1.30, p < 0.001), with DR in independent populations, strengthening the evidence of their true association. We also compiled a list of candidate SNPs for further validation. This study highlights the importance of consistent validation and replication efforts in the field of DR genetics. The two identified gene loci warrant further functional investigation to understand their role in DR pathogenesis. MDPI 2023-03-05 /pmc/articles/PMC10048213/ /pubmed/36980925 http://dx.doi.org/10.3390/genes14030653 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yu, Xinting
Rong, Shisong
Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy
title Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy
title_full Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy
title_fullStr Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy
title_full_unstemmed Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy
title_short Genome-Wide Associations and Confirmatory Meta-Analyses in Diabetic Retinopathy
title_sort genome-wide associations and confirmatory meta-analyses in diabetic retinopathy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048213/
https://www.ncbi.nlm.nih.gov/pubmed/36980925
http://dx.doi.org/10.3390/genes14030653
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