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Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense

Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. Liriodendron chinense, commonly called the Chinese tulip tree, is a rare and endangered tree species of the family M...

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Autores principales: Cao, Zijian, Ma, Qianxi, Weng, Yuhao, Shi, Jisen, Chen, Jinhui, Hao, Zhaodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048281/
https://www.ncbi.nlm.nih.gov/pubmed/36981040
http://dx.doi.org/10.3390/genes14030770
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author Cao, Zijian
Ma, Qianxi
Weng, Yuhao
Shi, Jisen
Chen, Jinhui
Hao, Zhaodong
author_facet Cao, Zijian
Ma, Qianxi
Weng, Yuhao
Shi, Jisen
Chen, Jinhui
Hao, Zhaodong
author_sort Cao, Zijian
collection PubMed
description Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. Liriodendron chinense, commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the TPS gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 TPS genes throughout the L. chinense genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that LcTPSs were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most LcTPS genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that LcTPS genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that LcTPS expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the TPS family, laying a foundation for further study of the regulation of TPS in terpenoid biosynthesis in L. chinense.
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spelling pubmed-100482812023-03-29 Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense Cao, Zijian Ma, Qianxi Weng, Yuhao Shi, Jisen Chen, Jinhui Hao, Zhaodong Genes (Basel) Article Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. Liriodendron chinense, commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the TPS gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 TPS genes throughout the L. chinense genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that LcTPSs were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most LcTPS genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that LcTPS genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that LcTPS expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the TPS family, laying a foundation for further study of the regulation of TPS in terpenoid biosynthesis in L. chinense. MDPI 2023-03-22 /pmc/articles/PMC10048281/ /pubmed/36981040 http://dx.doi.org/10.3390/genes14030770 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cao, Zijian
Ma, Qianxi
Weng, Yuhao
Shi, Jisen
Chen, Jinhui
Hao, Zhaodong
Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
title Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
title_full Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
title_fullStr Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
title_full_unstemmed Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
title_short Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
title_sort genome-wide identification and expression analysis of tps gene family in liriodendron chinense
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048281/
https://www.ncbi.nlm.nih.gov/pubmed/36981040
http://dx.doi.org/10.3390/genes14030770
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