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Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. Liriodendron chinense, commonly called the Chinese tulip tree, is a rare and endangered tree species of the family M...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048281/ https://www.ncbi.nlm.nih.gov/pubmed/36981040 http://dx.doi.org/10.3390/genes14030770 |
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author | Cao, Zijian Ma, Qianxi Weng, Yuhao Shi, Jisen Chen, Jinhui Hao, Zhaodong |
author_facet | Cao, Zijian Ma, Qianxi Weng, Yuhao Shi, Jisen Chen, Jinhui Hao, Zhaodong |
author_sort | Cao, Zijian |
collection | PubMed |
description | Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. Liriodendron chinense, commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the TPS gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 TPS genes throughout the L. chinense genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that LcTPSs were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most LcTPS genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that LcTPS genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that LcTPS expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the TPS family, laying a foundation for further study of the regulation of TPS in terpenoid biosynthesis in L. chinense. |
format | Online Article Text |
id | pubmed-10048281 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100482812023-03-29 Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense Cao, Zijian Ma, Qianxi Weng, Yuhao Shi, Jisen Chen, Jinhui Hao, Zhaodong Genes (Basel) Article Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. Liriodendron chinense, commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the TPS gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 TPS genes throughout the L. chinense genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that LcTPSs were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most LcTPS genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that LcTPS genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that LcTPS expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the TPS family, laying a foundation for further study of the regulation of TPS in terpenoid biosynthesis in L. chinense. MDPI 2023-03-22 /pmc/articles/PMC10048281/ /pubmed/36981040 http://dx.doi.org/10.3390/genes14030770 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Cao, Zijian Ma, Qianxi Weng, Yuhao Shi, Jisen Chen, Jinhui Hao, Zhaodong Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense |
title | Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense |
title_full | Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense |
title_fullStr | Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense |
title_full_unstemmed | Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense |
title_short | Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense |
title_sort | genome-wide identification and expression analysis of tps gene family in liriodendron chinense |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048281/ https://www.ncbi.nlm.nih.gov/pubmed/36981040 http://dx.doi.org/10.3390/genes14030770 |
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