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Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network

Obesity is a major risk factor for cardiovascular, cerebrovascular, metabolic, and respiratory diseases, and it has become an important social health problem affecting the health of the population. Obesity is affected by both genetic and environmental factors. In this study, we constructed a diet-in...

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Autores principales: Zhang, Xiaoxiao, Gu, Shuhua, Shen, Shunyi, Luo, Tao, Zhao, Haiyi, Liu, Sijia, Feng, Jingjie, Yang, Maosheng, Yi, Laqi, Fan, Zhaohan, Liu, Yu, Han, Rui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048691/
https://www.ncbi.nlm.nih.gov/pubmed/36980960
http://dx.doi.org/10.3390/genes14030688
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author Zhang, Xiaoxiao
Gu, Shuhua
Shen, Shunyi
Luo, Tao
Zhao, Haiyi
Liu, Sijia
Feng, Jingjie
Yang, Maosheng
Yi, Laqi
Fan, Zhaohan
Liu, Yu
Han, Rui
author_facet Zhang, Xiaoxiao
Gu, Shuhua
Shen, Shunyi
Luo, Tao
Zhao, Haiyi
Liu, Sijia
Feng, Jingjie
Yang, Maosheng
Yi, Laqi
Fan, Zhaohan
Liu, Yu
Han, Rui
author_sort Zhang, Xiaoxiao
collection PubMed
description Obesity is a major risk factor for cardiovascular, cerebrovascular, metabolic, and respiratory diseases, and it has become an important social health problem affecting the health of the population. Obesity is affected by both genetic and environmental factors. In this study, we constructed a diet-induced obese C57BL/6J mouse model and performed deep RNA sequencing (RNA-seq) on liner-depleted RNA extracted from the liver tissues of the mice to explore the underlying mechanisms of obesity. A total of 7469 circular RNAs (circRNAs) were detected, and 21 were differentially expressed (DE) in the high-fat diet (HFD) and low-fat diet (LFD) groups. We then constructed a comprehensive circRNA-associated competing endogenous RNA (ceRNA) network. Bioinformatic analysis indicated that DE circRNAs associated with lipid metabolic-related pathways may act as miRNA sponges to modulate target gene expression. CircRNA1709 and circRNA4842 may serve as new candidates to regulate the expression of PTEN. This study provides systematic circRNA-associated ceRNA profiling in HFD mouse liver, and the results can aid early diagnosis and the selection of treatment targets for obesity in the future.
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spelling pubmed-100486912023-03-29 Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network Zhang, Xiaoxiao Gu, Shuhua Shen, Shunyi Luo, Tao Zhao, Haiyi Liu, Sijia Feng, Jingjie Yang, Maosheng Yi, Laqi Fan, Zhaohan Liu, Yu Han, Rui Genes (Basel) Article Obesity is a major risk factor for cardiovascular, cerebrovascular, metabolic, and respiratory diseases, and it has become an important social health problem affecting the health of the population. Obesity is affected by both genetic and environmental factors. In this study, we constructed a diet-induced obese C57BL/6J mouse model and performed deep RNA sequencing (RNA-seq) on liner-depleted RNA extracted from the liver tissues of the mice to explore the underlying mechanisms of obesity. A total of 7469 circular RNAs (circRNAs) were detected, and 21 were differentially expressed (DE) in the high-fat diet (HFD) and low-fat diet (LFD) groups. We then constructed a comprehensive circRNA-associated competing endogenous RNA (ceRNA) network. Bioinformatic analysis indicated that DE circRNAs associated with lipid metabolic-related pathways may act as miRNA sponges to modulate target gene expression. CircRNA1709 and circRNA4842 may serve as new candidates to regulate the expression of PTEN. This study provides systematic circRNA-associated ceRNA profiling in HFD mouse liver, and the results can aid early diagnosis and the selection of treatment targets for obesity in the future. MDPI 2023-03-10 /pmc/articles/PMC10048691/ /pubmed/36980960 http://dx.doi.org/10.3390/genes14030688 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Xiaoxiao
Gu, Shuhua
Shen, Shunyi
Luo, Tao
Zhao, Haiyi
Liu, Sijia
Feng, Jingjie
Yang, Maosheng
Yi, Laqi
Fan, Zhaohan
Liu, Yu
Han, Rui
Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network
title Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network
title_full Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network
title_fullStr Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network
title_full_unstemmed Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network
title_short Identification of Circular RNA Profiles in the Liver of Diet-Induced Obese Mice and Construction of the ceRNA Network
title_sort identification of circular rna profiles in the liver of diet-induced obese mice and construction of the cerna network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048691/
https://www.ncbi.nlm.nih.gov/pubmed/36980960
http://dx.doi.org/10.3390/genes14030688
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