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Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues

Cholic acid is a trihydroxy bile acid with a nice peculiarity: the average distance between the oxygen atoms (O7 and O12) of the hydroxy groups located at C7 and C12 carbon atoms is 4.5 Å, a value which perfectly matches with the O/O tetrahedral edge distance in Ih ice. In the solid phase, they are...

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Autores principales: Vázquez-Tato, María Pilar, Seijas, Julio A., Meijide, Francisco, de Frutos, Santiago, Vázquez Tato, José
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048964/
https://www.ncbi.nlm.nih.gov/pubmed/36982433
http://dx.doi.org/10.3390/ijms24065359
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author Vázquez-Tato, María Pilar
Seijas, Julio A.
Meijide, Francisco
de Frutos, Santiago
Vázquez Tato, José
author_facet Vázquez-Tato, María Pilar
Seijas, Julio A.
Meijide, Francisco
de Frutos, Santiago
Vázquez Tato, José
author_sort Vázquez-Tato, María Pilar
collection PubMed
description Cholic acid is a trihydroxy bile acid with a nice peculiarity: the average distance between the oxygen atoms (O7 and O12) of the hydroxy groups located at C7 and C12 carbon atoms is 4.5 Å, a value which perfectly matches with the O/O tetrahedral edge distance in Ih ice. In the solid phase, they are involved in the formation of hydrogen bonds with other cholic acid units and solvents. This fact was satisfactorily used for designing a cholic dimer which encapsulates one single water molecule between two cholic residues, its oxygen atom (Ow) being exactly located at the centroid of a distorted tetrahedron formed by the four steroid hydroxy groups. The water molecule participates in four hydrogen bonds, with the water simultaneously being an acceptor from the 2 O12 (hydrogen lengths are 2.177 Å and 2.114 Å) and a donor towards the 2 O7 (hydrogen bond lengths are 1.866 Å and 1.920 Å). These facts suggest that this system can be a nice model for the theoretical study of the formation of ice-like structures. These are frequently proposed to describe the water structure found in a plethora of systems (water interfaces, metal complexes, solubilized hydrophobic species, proteins, and confined carbon nanotubes). The above tetrahedral structure is proposed as a reference model for those systems, and the results obtained from the application of the atoms in molecules theory are presented here. Furthermore, the structure of the whole system allows a division into two interesting subsystems in which water is the acceptor of one hydrogen bond and the donor of another. The analysis of the calculated electron density is performed through its gradient vector and the Laplacian. The calculation of the complexation energy used correction of the basis set superposition error (BSSE) with the counterpoise method. As expected, four critical points located in the H…O bond paths were identified. All calculated parameters obey the proposed criteria for hydrogen bonds. The total energy for the interaction in the tetrahedral structure is 54.29 kJ/mol, while the summation obtained of the two independent subsystems and the one between the alkyl rings without water is only 2.5 kJ/mol higher. This concordance, together with the calculated values for the electron density, the Laplacian of the electron density, and the lengths of the oxygen atom and the hydrogen atom (involved in the formation of each hydrogen bond) to the hydrogen bond critical point, suggests that each pair of hydrogen bonds can be considered independent of each other.
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spelling pubmed-100489642023-03-29 Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues Vázquez-Tato, María Pilar Seijas, Julio A. Meijide, Francisco de Frutos, Santiago Vázquez Tato, José Int J Mol Sci Article Cholic acid is a trihydroxy bile acid with a nice peculiarity: the average distance between the oxygen atoms (O7 and O12) of the hydroxy groups located at C7 and C12 carbon atoms is 4.5 Å, a value which perfectly matches with the O/O tetrahedral edge distance in Ih ice. In the solid phase, they are involved in the formation of hydrogen bonds with other cholic acid units and solvents. This fact was satisfactorily used for designing a cholic dimer which encapsulates one single water molecule between two cholic residues, its oxygen atom (Ow) being exactly located at the centroid of a distorted tetrahedron formed by the four steroid hydroxy groups. The water molecule participates in four hydrogen bonds, with the water simultaneously being an acceptor from the 2 O12 (hydrogen lengths are 2.177 Å and 2.114 Å) and a donor towards the 2 O7 (hydrogen bond lengths are 1.866 Å and 1.920 Å). These facts suggest that this system can be a nice model for the theoretical study of the formation of ice-like structures. These are frequently proposed to describe the water structure found in a plethora of systems (water interfaces, metal complexes, solubilized hydrophobic species, proteins, and confined carbon nanotubes). The above tetrahedral structure is proposed as a reference model for those systems, and the results obtained from the application of the atoms in molecules theory are presented here. Furthermore, the structure of the whole system allows a division into two interesting subsystems in which water is the acceptor of one hydrogen bond and the donor of another. The analysis of the calculated electron density is performed through its gradient vector and the Laplacian. The calculation of the complexation energy used correction of the basis set superposition error (BSSE) with the counterpoise method. As expected, four critical points located in the H…O bond paths were identified. All calculated parameters obey the proposed criteria for hydrogen bonds. The total energy for the interaction in the tetrahedral structure is 54.29 kJ/mol, while the summation obtained of the two independent subsystems and the one between the alkyl rings without water is only 2.5 kJ/mol higher. This concordance, together with the calculated values for the electron density, the Laplacian of the electron density, and the lengths of the oxygen atom and the hydrogen atom (involved in the formation of each hydrogen bond) to the hydrogen bond critical point, suggests that each pair of hydrogen bonds can be considered independent of each other. MDPI 2023-03-10 /pmc/articles/PMC10048964/ /pubmed/36982433 http://dx.doi.org/10.3390/ijms24065359 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Vázquez-Tato, María Pilar
Seijas, Julio A.
Meijide, Francisco
de Frutos, Santiago
Vázquez Tato, José
Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues
title Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues
title_full Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues
title_fullStr Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues
title_full_unstemmed Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues
title_short Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues
title_sort analysis of the electron density of a water molecule encapsulated by two cholic acid residues
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10048964/
https://www.ncbi.nlm.nih.gov/pubmed/36982433
http://dx.doi.org/10.3390/ijms24065359
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