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Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture

Colorectal cancer is one of the most common malignancies and the leading cause of cancer death worldwide. Wireless capsule endoscopy is currently the most frequent method for detecting precancerous digestive diseases. Thus, precise and early polyps segmentation has significant clinical value in redu...

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Autores principales: Lafraxo, Samira, Souaidi, Meryem, El Ansari, Mohamed, Koutti, Lahcen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10051085/
https://www.ncbi.nlm.nih.gov/pubmed/36983874
http://dx.doi.org/10.3390/life13030719
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author Lafraxo, Samira
Souaidi, Meryem
El Ansari, Mohamed
Koutti, Lahcen
author_facet Lafraxo, Samira
Souaidi, Meryem
El Ansari, Mohamed
Koutti, Lahcen
author_sort Lafraxo, Samira
collection PubMed
description Colorectal cancer is one of the most common malignancies and the leading cause of cancer death worldwide. Wireless capsule endoscopy is currently the most frequent method for detecting precancerous digestive diseases. Thus, precise and early polyps segmentation has significant clinical value in reducing the probability of cancer development. However, the manual examination is a time-consuming and tedious task for doctors. Therefore, scientists have proposed many computational techniques to automatically segment the anomalies from endoscopic images. In this paper, we present an end-to-end 2D attention residual U-Net architecture (AttResU-Net), which concurrently integrates the attention mechanism and residual units into U-Net for further polyp and bleeding segmentation performance enhancement. To reduce outside areas in an input image while emphasizing salient features, AttResU-Net inserts a sequence of attention units among related downsampling and upsampling steps. On the other hand, the residual block propagates information across layers, allowing for the construction of a deeper neural network capable of solving the vanishing gradient issue in each encoder. This improves the channel interdependencies while lowering the computational cost. Multiple publicly available datasets were employed in this work, to evaluate and verify the proposed method. Our highest-performing model was AttResU-Net, on the MICCAI 2017 WCE dataset, which achieved an accuracy of 99.16%, a Dice coefficient of 94.91%, and a Jaccard index of 90.32%. The experiment findings show that the proposed AttResU-Net overcomes its baselines and provides performance comparable to existing polyp segmentation approaches.
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spelling pubmed-100510852023-03-30 Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture Lafraxo, Samira Souaidi, Meryem El Ansari, Mohamed Koutti, Lahcen Life (Basel) Article Colorectal cancer is one of the most common malignancies and the leading cause of cancer death worldwide. Wireless capsule endoscopy is currently the most frequent method for detecting precancerous digestive diseases. Thus, precise and early polyps segmentation has significant clinical value in reducing the probability of cancer development. However, the manual examination is a time-consuming and tedious task for doctors. Therefore, scientists have proposed many computational techniques to automatically segment the anomalies from endoscopic images. In this paper, we present an end-to-end 2D attention residual U-Net architecture (AttResU-Net), which concurrently integrates the attention mechanism and residual units into U-Net for further polyp and bleeding segmentation performance enhancement. To reduce outside areas in an input image while emphasizing salient features, AttResU-Net inserts a sequence of attention units among related downsampling and upsampling steps. On the other hand, the residual block propagates information across layers, allowing for the construction of a deeper neural network capable of solving the vanishing gradient issue in each encoder. This improves the channel interdependencies while lowering the computational cost. Multiple publicly available datasets were employed in this work, to evaluate and verify the proposed method. Our highest-performing model was AttResU-Net, on the MICCAI 2017 WCE dataset, which achieved an accuracy of 99.16%, a Dice coefficient of 94.91%, and a Jaccard index of 90.32%. The experiment findings show that the proposed AttResU-Net overcomes its baselines and provides performance comparable to existing polyp segmentation approaches. MDPI 2023-03-07 /pmc/articles/PMC10051085/ /pubmed/36983874 http://dx.doi.org/10.3390/life13030719 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lafraxo, Samira
Souaidi, Meryem
El Ansari, Mohamed
Koutti, Lahcen
Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture
title Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture
title_full Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture
title_fullStr Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture
title_full_unstemmed Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture
title_short Semantic Segmentation of Digestive Abnormalities from WCE Images by Using AttResU-Net Architecture
title_sort semantic segmentation of digestive abnormalities from wce images by using attresu-net architecture
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10051085/
https://www.ncbi.nlm.nih.gov/pubmed/36983874
http://dx.doi.org/10.3390/life13030719
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