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Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer

Background and Objectives: The molecular mechanisms of lung cancer are still unclear. Investigation of immune cell infiltration (ICI) and the hub gene will facilitate the identification of specific biomarkers. Materials and Methods: Key modules of ICI and immune cell-associated differential genes, a...

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Autores principales: Liu, Mengfeng, Yu, Xiran, Qu, Changfa, Xu, Shidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10051862/
https://www.ncbi.nlm.nih.gov/pubmed/36984548
http://dx.doi.org/10.3390/medicina59030547
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author Liu, Mengfeng
Yu, Xiran
Qu, Changfa
Xu, Shidong
author_facet Liu, Mengfeng
Yu, Xiran
Qu, Changfa
Xu, Shidong
author_sort Liu, Mengfeng
collection PubMed
description Background and Objectives: The molecular mechanisms of lung cancer are still unclear. Investigation of immune cell infiltration (ICI) and the hub gene will facilitate the identification of specific biomarkers. Materials and Methods: Key modules of ICI and immune cell-associated differential genes, as well as ICI profiles, were identified using lung cancer microarray data from the single sample gene set enrichment analysis (ssGSEA) and weighted gene co-expression network analysis (WGCNA) in the gene expression omnibus (GEO) database. Protein–protein interaction networks were used to identify hub genes. The receiver operating characteristic (ROC) curve was used to assess the diagnostic significance of the hub genes, and survival analysis was performed using gene expression profiling interactive analysis (GEPIA). Results: Significant changes in ICI were found in lung cancer tissues versus adjacent normal tissues. WGCNA results showed the highest correlation of yellow and blue modules with ICI. Protein–protein interaction networks identified four hub genes, namely CENPF, AURKA, PBK, and CCNB1. The lung adenocarcinoma patients in the low hub gene expression group showed higher overall survival and longer median survival than the high expression group. They were associated with a decreased risk of lung cancer in patients, indicating their potential role as cancer suppressor genes and potential targets for future therapeutic development. Conclusions: CENPF, AURKA, PBK, and CCNB1 show great potential as biomarkers and immunotherapeutic targets specific to lung cancer. Lung cancer patients’ prognoses are often foreseen using matched prognostic models, and genes CENPF, AURKA, PBK, and CCNB1 in lung cancer may serve as therapeutic targets, which require further investigations.
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spelling pubmed-100518622023-03-30 Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer Liu, Mengfeng Yu, Xiran Qu, Changfa Xu, Shidong Medicina (Kaunas) Article Background and Objectives: The molecular mechanisms of lung cancer are still unclear. Investigation of immune cell infiltration (ICI) and the hub gene will facilitate the identification of specific biomarkers. Materials and Methods: Key modules of ICI and immune cell-associated differential genes, as well as ICI profiles, were identified using lung cancer microarray data from the single sample gene set enrichment analysis (ssGSEA) and weighted gene co-expression network analysis (WGCNA) in the gene expression omnibus (GEO) database. Protein–protein interaction networks were used to identify hub genes. The receiver operating characteristic (ROC) curve was used to assess the diagnostic significance of the hub genes, and survival analysis was performed using gene expression profiling interactive analysis (GEPIA). Results: Significant changes in ICI were found in lung cancer tissues versus adjacent normal tissues. WGCNA results showed the highest correlation of yellow and blue modules with ICI. Protein–protein interaction networks identified four hub genes, namely CENPF, AURKA, PBK, and CCNB1. The lung adenocarcinoma patients in the low hub gene expression group showed higher overall survival and longer median survival than the high expression group. They were associated with a decreased risk of lung cancer in patients, indicating their potential role as cancer suppressor genes and potential targets for future therapeutic development. Conclusions: CENPF, AURKA, PBK, and CCNB1 show great potential as biomarkers and immunotherapeutic targets specific to lung cancer. Lung cancer patients’ prognoses are often foreseen using matched prognostic models, and genes CENPF, AURKA, PBK, and CCNB1 in lung cancer may serve as therapeutic targets, which require further investigations. MDPI 2023-03-10 /pmc/articles/PMC10051862/ /pubmed/36984548 http://dx.doi.org/10.3390/medicina59030547 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Mengfeng
Yu, Xiran
Qu, Changfa
Xu, Shidong
Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer
title Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer
title_full Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer
title_fullStr Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer
title_full_unstemmed Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer
title_short Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer
title_sort predictive value of gene databases in discovering new biomarkers and new therapeutic targets in lung cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10051862/
https://www.ncbi.nlm.nih.gov/pubmed/36984548
http://dx.doi.org/10.3390/medicina59030547
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