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Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer
Background and Objectives: The molecular mechanisms of lung cancer are still unclear. Investigation of immune cell infiltration (ICI) and the hub gene will facilitate the identification of specific biomarkers. Materials and Methods: Key modules of ICI and immune cell-associated differential genes, a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10051862/ https://www.ncbi.nlm.nih.gov/pubmed/36984548 http://dx.doi.org/10.3390/medicina59030547 |
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author | Liu, Mengfeng Yu, Xiran Qu, Changfa Xu, Shidong |
author_facet | Liu, Mengfeng Yu, Xiran Qu, Changfa Xu, Shidong |
author_sort | Liu, Mengfeng |
collection | PubMed |
description | Background and Objectives: The molecular mechanisms of lung cancer are still unclear. Investigation of immune cell infiltration (ICI) and the hub gene will facilitate the identification of specific biomarkers. Materials and Methods: Key modules of ICI and immune cell-associated differential genes, as well as ICI profiles, were identified using lung cancer microarray data from the single sample gene set enrichment analysis (ssGSEA) and weighted gene co-expression network analysis (WGCNA) in the gene expression omnibus (GEO) database. Protein–protein interaction networks were used to identify hub genes. The receiver operating characteristic (ROC) curve was used to assess the diagnostic significance of the hub genes, and survival analysis was performed using gene expression profiling interactive analysis (GEPIA). Results: Significant changes in ICI were found in lung cancer tissues versus adjacent normal tissues. WGCNA results showed the highest correlation of yellow and blue modules with ICI. Protein–protein interaction networks identified four hub genes, namely CENPF, AURKA, PBK, and CCNB1. The lung adenocarcinoma patients in the low hub gene expression group showed higher overall survival and longer median survival than the high expression group. They were associated with a decreased risk of lung cancer in patients, indicating their potential role as cancer suppressor genes and potential targets for future therapeutic development. Conclusions: CENPF, AURKA, PBK, and CCNB1 show great potential as biomarkers and immunotherapeutic targets specific to lung cancer. Lung cancer patients’ prognoses are often foreseen using matched prognostic models, and genes CENPF, AURKA, PBK, and CCNB1 in lung cancer may serve as therapeutic targets, which require further investigations. |
format | Online Article Text |
id | pubmed-10051862 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100518622023-03-30 Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer Liu, Mengfeng Yu, Xiran Qu, Changfa Xu, Shidong Medicina (Kaunas) Article Background and Objectives: The molecular mechanisms of lung cancer are still unclear. Investigation of immune cell infiltration (ICI) and the hub gene will facilitate the identification of specific biomarkers. Materials and Methods: Key modules of ICI and immune cell-associated differential genes, as well as ICI profiles, were identified using lung cancer microarray data from the single sample gene set enrichment analysis (ssGSEA) and weighted gene co-expression network analysis (WGCNA) in the gene expression omnibus (GEO) database. Protein–protein interaction networks were used to identify hub genes. The receiver operating characteristic (ROC) curve was used to assess the diagnostic significance of the hub genes, and survival analysis was performed using gene expression profiling interactive analysis (GEPIA). Results: Significant changes in ICI were found in lung cancer tissues versus adjacent normal tissues. WGCNA results showed the highest correlation of yellow and blue modules with ICI. Protein–protein interaction networks identified four hub genes, namely CENPF, AURKA, PBK, and CCNB1. The lung adenocarcinoma patients in the low hub gene expression group showed higher overall survival and longer median survival than the high expression group. They were associated with a decreased risk of lung cancer in patients, indicating their potential role as cancer suppressor genes and potential targets for future therapeutic development. Conclusions: CENPF, AURKA, PBK, and CCNB1 show great potential as biomarkers and immunotherapeutic targets specific to lung cancer. Lung cancer patients’ prognoses are often foreseen using matched prognostic models, and genes CENPF, AURKA, PBK, and CCNB1 in lung cancer may serve as therapeutic targets, which require further investigations. MDPI 2023-03-10 /pmc/articles/PMC10051862/ /pubmed/36984548 http://dx.doi.org/10.3390/medicina59030547 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Liu, Mengfeng Yu, Xiran Qu, Changfa Xu, Shidong Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer |
title | Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer |
title_full | Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer |
title_fullStr | Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer |
title_full_unstemmed | Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer |
title_short | Predictive Value of Gene Databases in Discovering New Biomarkers and New Therapeutic Targets in Lung Cancer |
title_sort | predictive value of gene databases in discovering new biomarkers and new therapeutic targets in lung cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10051862/ https://www.ncbi.nlm.nih.gov/pubmed/36984548 http://dx.doi.org/10.3390/medicina59030547 |
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