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Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)
[Image: see text] In this paper, we present an open-source machine learning (ML)-accelerated computational method to analyze small-angle scattering profiles [I(q) vs q] from concentrated macromolecular solutions to simultaneously obtain the form factor P(q) (e.g., dimensions of a micelle) and the st...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10052275/ https://www.ncbi.nlm.nih.gov/pubmed/37006757 http://dx.doi.org/10.1021/jacsau.2c00697 |
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author | Heil, Christian M. Ma, Yingzhen Bharti, Bhuvnesh Jayaraman, Arthi |
author_facet | Heil, Christian M. Ma, Yingzhen Bharti, Bhuvnesh Jayaraman, Arthi |
author_sort | Heil, Christian M. |
collection | PubMed |
description | [Image: see text] In this paper, we present an open-source machine learning (ML)-accelerated computational method to analyze small-angle scattering profiles [I(q) vs q] from concentrated macromolecular solutions to simultaneously obtain the form factor P(q) (e.g., dimensions of a micelle) and the structure factor S(q) (e.g., spatial arrangement of the micelles) without relying on analytical models. This method builds on our recent work on Computational Reverse-Engineering Analysis for Scattering Experiments (CREASE) that has either been applied to obtain P(q) from dilute macromolecular solutions (where S(q) ∼1) or to obtain S(q) from concentrated particle solutions when P(q) is known (e.g., sphere form factor). This paper’s newly developed CREASE that calculates P(q) and S(q), termed as “P(q) and S(q) CREASE”, is validated by taking as input I(q) vs q from in silico structures of known polydisperse core(A)–shell(B) micelles in solutions at varying concentrations and micelle–micelle aggregation. We demonstrate how “P(q) and S(q) CREASE” performs if given two or three of the relevant scattering profiles—I(total)(q), I(A)(q), and I(B)(q)—as inputs; this demonstration is meant to guide experimentalists who may choose to do small-angle X-ray scattering (for total scattering from the micelles) and/or small-angle neutron scattering with appropriate contrast matching to get scattering solely from one or the other component (A or B). After validation of “P(q) and S(q) CREASE” on in silico structures, we present our results analyzing small-angle neutron scattering profiles from a solution of core–shell type surfactant-coated nanoparticles with varying extents of aggregation. |
format | Online Article Text |
id | pubmed-10052275 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-100522752023-03-30 Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) Heil, Christian M. Ma, Yingzhen Bharti, Bhuvnesh Jayaraman, Arthi JACS Au [Image: see text] In this paper, we present an open-source machine learning (ML)-accelerated computational method to analyze small-angle scattering profiles [I(q) vs q] from concentrated macromolecular solutions to simultaneously obtain the form factor P(q) (e.g., dimensions of a micelle) and the structure factor S(q) (e.g., spatial arrangement of the micelles) without relying on analytical models. This method builds on our recent work on Computational Reverse-Engineering Analysis for Scattering Experiments (CREASE) that has either been applied to obtain P(q) from dilute macromolecular solutions (where S(q) ∼1) or to obtain S(q) from concentrated particle solutions when P(q) is known (e.g., sphere form factor). This paper’s newly developed CREASE that calculates P(q) and S(q), termed as “P(q) and S(q) CREASE”, is validated by taking as input I(q) vs q from in silico structures of known polydisperse core(A)–shell(B) micelles in solutions at varying concentrations and micelle–micelle aggregation. We demonstrate how “P(q) and S(q) CREASE” performs if given two or three of the relevant scattering profiles—I(total)(q), I(A)(q), and I(B)(q)—as inputs; this demonstration is meant to guide experimentalists who may choose to do small-angle X-ray scattering (for total scattering from the micelles) and/or small-angle neutron scattering with appropriate contrast matching to get scattering solely from one or the other component (A or B). After validation of “P(q) and S(q) CREASE” on in silico structures, we present our results analyzing small-angle neutron scattering profiles from a solution of core–shell type surfactant-coated nanoparticles with varying extents of aggregation. American Chemical Society 2023-02-20 /pmc/articles/PMC10052275/ /pubmed/37006757 http://dx.doi.org/10.1021/jacsau.2c00697 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Heil, Christian M. Ma, Yingzhen Bharti, Bhuvnesh Jayaraman, Arthi Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) |
title | Computational Reverse-Engineering Analysis for Scattering
Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) |
title_full | Computational Reverse-Engineering Analysis for Scattering
Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) |
title_fullStr | Computational Reverse-Engineering Analysis for Scattering
Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) |
title_full_unstemmed | Computational Reverse-Engineering Analysis for Scattering
Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) |
title_short | Computational Reverse-Engineering Analysis for Scattering
Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) |
title_sort | computational reverse-engineering analysis for scattering
experiments for form factor and structure factor determination (“p(q) and s(q) crease”) |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10052275/ https://www.ncbi.nlm.nih.gov/pubmed/37006757 http://dx.doi.org/10.1021/jacsau.2c00697 |
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