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Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)

[Image: see text] In this paper, we present an open-source machine learning (ML)-accelerated computational method to analyze small-angle scattering profiles [I(q) vs q] from concentrated macromolecular solutions to simultaneously obtain the form factor P(q) (e.g., dimensions of a micelle) and the st...

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Autores principales: Heil, Christian M., Ma, Yingzhen, Bharti, Bhuvnesh, Jayaraman, Arthi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10052275/
https://www.ncbi.nlm.nih.gov/pubmed/37006757
http://dx.doi.org/10.1021/jacsau.2c00697
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author Heil, Christian M.
Ma, Yingzhen
Bharti, Bhuvnesh
Jayaraman, Arthi
author_facet Heil, Christian M.
Ma, Yingzhen
Bharti, Bhuvnesh
Jayaraman, Arthi
author_sort Heil, Christian M.
collection PubMed
description [Image: see text] In this paper, we present an open-source machine learning (ML)-accelerated computational method to analyze small-angle scattering profiles [I(q) vs q] from concentrated macromolecular solutions to simultaneously obtain the form factor P(q) (e.g., dimensions of a micelle) and the structure factor S(q) (e.g., spatial arrangement of the micelles) without relying on analytical models. This method builds on our recent work on Computational Reverse-Engineering Analysis for Scattering Experiments (CREASE) that has either been applied to obtain P(q) from dilute macromolecular solutions (where S(q) ∼1) or to obtain S(q) from concentrated particle solutions when P(q) is known (e.g., sphere form factor). This paper’s newly developed CREASE that calculates P(q) and S(q), termed as “P(q) and S(q) CREASE”, is validated by taking as input I(q) vs q from in silico structures of known polydisperse core(A)–shell(B) micelles in solutions at varying concentrations and micelle–micelle aggregation. We demonstrate how “P(q) and S(q) CREASE” performs if given two or three of the relevant scattering profiles—I(total)(q), I(A)(q), and I(B)(q)—as inputs; this demonstration is meant to guide experimentalists who may choose to do small-angle X-ray scattering (for total scattering from the micelles) and/or small-angle neutron scattering with appropriate contrast matching to get scattering solely from one or the other component (A or B). After validation of “P(q) and S(q) CREASE” on in silico structures, we present our results analyzing small-angle neutron scattering profiles from a solution of core–shell type surfactant-coated nanoparticles with varying extents of aggregation.
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spelling pubmed-100522752023-03-30 Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”) Heil, Christian M. Ma, Yingzhen Bharti, Bhuvnesh Jayaraman, Arthi JACS Au [Image: see text] In this paper, we present an open-source machine learning (ML)-accelerated computational method to analyze small-angle scattering profiles [I(q) vs q] from concentrated macromolecular solutions to simultaneously obtain the form factor P(q) (e.g., dimensions of a micelle) and the structure factor S(q) (e.g., spatial arrangement of the micelles) without relying on analytical models. This method builds on our recent work on Computational Reverse-Engineering Analysis for Scattering Experiments (CREASE) that has either been applied to obtain P(q) from dilute macromolecular solutions (where S(q) ∼1) or to obtain S(q) from concentrated particle solutions when P(q) is known (e.g., sphere form factor). This paper’s newly developed CREASE that calculates P(q) and S(q), termed as “P(q) and S(q) CREASE”, is validated by taking as input I(q) vs q from in silico structures of known polydisperse core(A)–shell(B) micelles in solutions at varying concentrations and micelle–micelle aggregation. We demonstrate how “P(q) and S(q) CREASE” performs if given two or three of the relevant scattering profiles—I(total)(q), I(A)(q), and I(B)(q)—as inputs; this demonstration is meant to guide experimentalists who may choose to do small-angle X-ray scattering (for total scattering from the micelles) and/or small-angle neutron scattering with appropriate contrast matching to get scattering solely from one or the other component (A or B). After validation of “P(q) and S(q) CREASE” on in silico structures, we present our results analyzing small-angle neutron scattering profiles from a solution of core–shell type surfactant-coated nanoparticles with varying extents of aggregation. American Chemical Society 2023-02-20 /pmc/articles/PMC10052275/ /pubmed/37006757 http://dx.doi.org/10.1021/jacsau.2c00697 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Heil, Christian M.
Ma, Yingzhen
Bharti, Bhuvnesh
Jayaraman, Arthi
Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)
title Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)
title_full Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)
title_fullStr Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)
title_full_unstemmed Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)
title_short Computational Reverse-Engineering Analysis for Scattering Experiments for Form Factor and Structure Factor Determination (“P(q) and S(q) CREASE”)
title_sort computational reverse-engineering analysis for scattering experiments for form factor and structure factor determination (“p(q) and s(q) crease”)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10052275/
https://www.ncbi.nlm.nih.gov/pubmed/37006757
http://dx.doi.org/10.1021/jacsau.2c00697
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