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Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution

Currently, colorectal cancer (CRC) represents the third most common malignancy and the second most deadly cancer worldwide, with a higher incidence in developed countries. Like other solid tumors, CRC is a heterogeneous genomic disease in which various alterations, such as point mutations, genomic r...

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Autores principales: Abbes, Salma, Baldi, Simone, Sellami, Hayet, Amedei, Amedeo, Keskes, Leila
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Baishideng Publishing Group Inc 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10052664/
https://www.ncbi.nlm.nih.gov/pubmed/37009313
http://dx.doi.org/10.4251/wjgo.v15.i3.425
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author Abbes, Salma
Baldi, Simone
Sellami, Hayet
Amedei, Amedeo
Keskes, Leila
author_facet Abbes, Salma
Baldi, Simone
Sellami, Hayet
Amedei, Amedeo
Keskes, Leila
author_sort Abbes, Salma
collection PubMed
description Currently, colorectal cancer (CRC) represents the third most common malignancy and the second most deadly cancer worldwide, with a higher incidence in developed countries. Like other solid tumors, CRC is a heterogeneous genomic disease in which various alterations, such as point mutations, genomic rearrangements, gene fusions or chromosomal copy number alterations, can contribute to the disease development. However, because of its orderly natural history, easily accessible onset location and high lifetime incidence, CRC is ideally suited for preventive intervention, but the many screening efforts of the last decades have been compromised by performance limitations and low penetrance of the standard screening tools. The advent of next-generation sequencing (NGS) has both facilitated the identification of previously unrecognized CRC features such as its relationship with gut microbial pathogens and revolutionized the speed and throughput of cataloguing CRC-related genomic alterations. Hence, in this review, we summarized the several diagnostic tools used for CRC screening in the past and the present, focusing on recent NGS approaches and their revolutionary role in the identification of novel genomic CRC characteristics, the advancement of understanding the CRC carcinogenesis and the screening of clinically actionable targets for personalized medicine.
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spelling pubmed-100526642023-03-30 Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution Abbes, Salma Baldi, Simone Sellami, Hayet Amedei, Amedeo Keskes, Leila World J Gastrointest Oncol Review Currently, colorectal cancer (CRC) represents the third most common malignancy and the second most deadly cancer worldwide, with a higher incidence in developed countries. Like other solid tumors, CRC is a heterogeneous genomic disease in which various alterations, such as point mutations, genomic rearrangements, gene fusions or chromosomal copy number alterations, can contribute to the disease development. However, because of its orderly natural history, easily accessible onset location and high lifetime incidence, CRC is ideally suited for preventive intervention, but the many screening efforts of the last decades have been compromised by performance limitations and low penetrance of the standard screening tools. The advent of next-generation sequencing (NGS) has both facilitated the identification of previously unrecognized CRC features such as its relationship with gut microbial pathogens and revolutionized the speed and throughput of cataloguing CRC-related genomic alterations. Hence, in this review, we summarized the several diagnostic tools used for CRC screening in the past and the present, focusing on recent NGS approaches and their revolutionary role in the identification of novel genomic CRC characteristics, the advancement of understanding the CRC carcinogenesis and the screening of clinically actionable targets for personalized medicine. Baishideng Publishing Group Inc 2023-03-15 2023-03-15 /pmc/articles/PMC10052664/ /pubmed/37009313 http://dx.doi.org/10.4251/wjgo.v15.i3.425 Text en ©The Author(s) 2023. Published by Baishideng Publishing Group Inc. All rights reserved. https://creativecommons.org/licenses/by-nc/4.0/This article is an open-access article that was selected by an in-house editor and fully peer-reviewed by external reviewers. It is distributed in accordance with the Creative Commons Attribution NonCommercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial.
spellingShingle Review
Abbes, Salma
Baldi, Simone
Sellami, Hayet
Amedei, Amedeo
Keskes, Leila
Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution
title Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution
title_full Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution
title_fullStr Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution
title_full_unstemmed Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution
title_short Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution
title_sort molecular methods for colorectal cancer screening: progress with next-generation sequencing evolution
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10052664/
https://www.ncbi.nlm.nih.gov/pubmed/37009313
http://dx.doi.org/10.4251/wjgo.v15.i3.425
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