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Data Science and Plant Metabolomics
The study of plant metabolism is one of the most complex tasks, mainly due to the huge amount and structural diversity of metabolites, as well as the fact that they react to changes in the environment and ultimately influence each other. Metabolic profiling is most often carried out using tools that...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10054611/ https://www.ncbi.nlm.nih.gov/pubmed/36984894 http://dx.doi.org/10.3390/metabo13030454 |
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author | Kisiel, Anna Krzemińska, Adrianna Cembrowska-Lech, Danuta Miller, Tymoteusz |
author_facet | Kisiel, Anna Krzemińska, Adrianna Cembrowska-Lech, Danuta Miller, Tymoteusz |
author_sort | Kisiel, Anna |
collection | PubMed |
description | The study of plant metabolism is one of the most complex tasks, mainly due to the huge amount and structural diversity of metabolites, as well as the fact that they react to changes in the environment and ultimately influence each other. Metabolic profiling is most often carried out using tools that include mass spectrometry (MS), which is one of the most powerful analytical methods. All this means that even when analyzing a single sample, we can obtain thousands of data. Data science has the potential to revolutionize our understanding of plant metabolism. This review demonstrates that machine learning, network analysis, and statistical modeling are some techniques being used to analyze large quantities of complex data that provide insights into plant development, growth, and how they interact with their environment. These findings could be key to improving crop yields, developing new forms of plant biotechnology, and understanding the relationship between plants and microbes. It is also necessary to consider the constraints that come with data science such as quality and availability of data, model complexity, and the need for deep knowledge of the subject in order to achieve reliable outcomes. |
format | Online Article Text |
id | pubmed-10054611 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100546112023-03-30 Data Science and Plant Metabolomics Kisiel, Anna Krzemińska, Adrianna Cembrowska-Lech, Danuta Miller, Tymoteusz Metabolites Review The study of plant metabolism is one of the most complex tasks, mainly due to the huge amount and structural diversity of metabolites, as well as the fact that they react to changes in the environment and ultimately influence each other. Metabolic profiling is most often carried out using tools that include mass spectrometry (MS), which is one of the most powerful analytical methods. All this means that even when analyzing a single sample, we can obtain thousands of data. Data science has the potential to revolutionize our understanding of plant metabolism. This review demonstrates that machine learning, network analysis, and statistical modeling are some techniques being used to analyze large quantities of complex data that provide insights into plant development, growth, and how they interact with their environment. These findings could be key to improving crop yields, developing new forms of plant biotechnology, and understanding the relationship between plants and microbes. It is also necessary to consider the constraints that come with data science such as quality and availability of data, model complexity, and the need for deep knowledge of the subject in order to achieve reliable outcomes. MDPI 2023-03-20 /pmc/articles/PMC10054611/ /pubmed/36984894 http://dx.doi.org/10.3390/metabo13030454 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Kisiel, Anna Krzemińska, Adrianna Cembrowska-Lech, Danuta Miller, Tymoteusz Data Science and Plant Metabolomics |
title | Data Science and Plant Metabolomics |
title_full | Data Science and Plant Metabolomics |
title_fullStr | Data Science and Plant Metabolomics |
title_full_unstemmed | Data Science and Plant Metabolomics |
title_short | Data Science and Plant Metabolomics |
title_sort | data science and plant metabolomics |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10054611/ https://www.ncbi.nlm.nih.gov/pubmed/36984894 http://dx.doi.org/10.3390/metabo13030454 |
work_keys_str_mv | AT kisielanna datascienceandplantmetabolomics AT krzeminskaadrianna datascienceandplantmetabolomics AT cembrowskalechdanuta datascienceandplantmetabolomics AT millertymoteusz datascienceandplantmetabolomics |