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Data Science and Plant Metabolomics

The study of plant metabolism is one of the most complex tasks, mainly due to the huge amount and structural diversity of metabolites, as well as the fact that they react to changes in the environment and ultimately influence each other. Metabolic profiling is most often carried out using tools that...

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Autores principales: Kisiel, Anna, Krzemińska, Adrianna, Cembrowska-Lech, Danuta, Miller, Tymoteusz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10054611/
https://www.ncbi.nlm.nih.gov/pubmed/36984894
http://dx.doi.org/10.3390/metabo13030454
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author Kisiel, Anna
Krzemińska, Adrianna
Cembrowska-Lech, Danuta
Miller, Tymoteusz
author_facet Kisiel, Anna
Krzemińska, Adrianna
Cembrowska-Lech, Danuta
Miller, Tymoteusz
author_sort Kisiel, Anna
collection PubMed
description The study of plant metabolism is one of the most complex tasks, mainly due to the huge amount and structural diversity of metabolites, as well as the fact that they react to changes in the environment and ultimately influence each other. Metabolic profiling is most often carried out using tools that include mass spectrometry (MS), which is one of the most powerful analytical methods. All this means that even when analyzing a single sample, we can obtain thousands of data. Data science has the potential to revolutionize our understanding of plant metabolism. This review demonstrates that machine learning, network analysis, and statistical modeling are some techniques being used to analyze large quantities of complex data that provide insights into plant development, growth, and how they interact with their environment. These findings could be key to improving crop yields, developing new forms of plant biotechnology, and understanding the relationship between plants and microbes. It is also necessary to consider the constraints that come with data science such as quality and availability of data, model complexity, and the need for deep knowledge of the subject in order to achieve reliable outcomes.
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spelling pubmed-100546112023-03-30 Data Science and Plant Metabolomics Kisiel, Anna Krzemińska, Adrianna Cembrowska-Lech, Danuta Miller, Tymoteusz Metabolites Review The study of plant metabolism is one of the most complex tasks, mainly due to the huge amount and structural diversity of metabolites, as well as the fact that they react to changes in the environment and ultimately influence each other. Metabolic profiling is most often carried out using tools that include mass spectrometry (MS), which is one of the most powerful analytical methods. All this means that even when analyzing a single sample, we can obtain thousands of data. Data science has the potential to revolutionize our understanding of plant metabolism. This review demonstrates that machine learning, network analysis, and statistical modeling are some techniques being used to analyze large quantities of complex data that provide insights into plant development, growth, and how they interact with their environment. These findings could be key to improving crop yields, developing new forms of plant biotechnology, and understanding the relationship between plants and microbes. It is also necessary to consider the constraints that come with data science such as quality and availability of data, model complexity, and the need for deep knowledge of the subject in order to achieve reliable outcomes. MDPI 2023-03-20 /pmc/articles/PMC10054611/ /pubmed/36984894 http://dx.doi.org/10.3390/metabo13030454 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Kisiel, Anna
Krzemińska, Adrianna
Cembrowska-Lech, Danuta
Miller, Tymoteusz
Data Science and Plant Metabolomics
title Data Science and Plant Metabolomics
title_full Data Science and Plant Metabolomics
title_fullStr Data Science and Plant Metabolomics
title_full_unstemmed Data Science and Plant Metabolomics
title_short Data Science and Plant Metabolomics
title_sort data science and plant metabolomics
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10054611/
https://www.ncbi.nlm.nih.gov/pubmed/36984894
http://dx.doi.org/10.3390/metabo13030454
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