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Bipartite invariance in mouse primary visual cortex

A defining characteristic of intelligent systems, whether natural or artificial, is the ability to generalize and infer behaviorally relevant latent causes from high-dimensional sensory input, despite significant variations in the environment. To understand how brains achieve generalization, it is c...

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Autores principales: Ding, Zhiwei, Tran, Dat T., Ponder, Kayla, Cobos, Erick, Ding, Zhuokun, Fahey, Paul G., Wang, Eric, Muhammad, Taliah, Fu, Jiakun, Cadena, Santiago A., Papadopoulos, Stelios, Patel, Saumil, Franke, Katrin, Reimer, Jacob, Sinz, Fabian H., Ecker, Alexander S., Pitkow, Xaq, Tolias, Andreas S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10055119/
https://www.ncbi.nlm.nih.gov/pubmed/36993218
http://dx.doi.org/10.1101/2023.03.15.532836
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author Ding, Zhiwei
Tran, Dat T.
Ponder, Kayla
Cobos, Erick
Ding, Zhuokun
Fahey, Paul G.
Wang, Eric
Muhammad, Taliah
Fu, Jiakun
Cadena, Santiago A.
Papadopoulos, Stelios
Patel, Saumil
Franke, Katrin
Reimer, Jacob
Sinz, Fabian H.
Ecker, Alexander S.
Pitkow, Xaq
Tolias, Andreas S.
author_facet Ding, Zhiwei
Tran, Dat T.
Ponder, Kayla
Cobos, Erick
Ding, Zhuokun
Fahey, Paul G.
Wang, Eric
Muhammad, Taliah
Fu, Jiakun
Cadena, Santiago A.
Papadopoulos, Stelios
Patel, Saumil
Franke, Katrin
Reimer, Jacob
Sinz, Fabian H.
Ecker, Alexander S.
Pitkow, Xaq
Tolias, Andreas S.
author_sort Ding, Zhiwei
collection PubMed
description A defining characteristic of intelligent systems, whether natural or artificial, is the ability to generalize and infer behaviorally relevant latent causes from high-dimensional sensory input, despite significant variations in the environment. To understand how brains achieve generalization, it is crucial to identify the features to which neurons respond selectively and invariantly. However, the high-dimensional nature of visual inputs, the non-linearity of information processing in the brain, and limited experimental time make it challenging to systematically characterize neuronal tuning and invariances, especially for natural stimuli. Here, we extended “inception loops” — a paradigm that iterates between large-scale recordings, neural predictive models, and in silico experiments followed by in vivo verification — to systematically characterize single neuron invariances in the mouse primary visual cortex. Using the predictive model we synthesized Diverse Exciting Inputs (DEIs), a set of inputs that differ substantially from each other while each driving a target neuron strongly, and verified these DEIs’ efficacy in vivo. We discovered a novel bipartite invariance: one portion of the receptive field encoded phase-invariant texture-like patterns, while the other portion encoded a fixed spatial pattern. Our analysis revealed that the division between the fixed and invariant portions of the receptive fields aligns with object boundaries defined by spatial frequency differences present in highly activating natural images. These findings suggest that bipartite invariance might play a role in segmentation by detecting texture-defined object boundaries, independent of the phase of the texture. We also replicated these bipartite DEIs in the functional connectomics MICrONs data set, which opens the way towards a circuit-level mechanistic understanding of this novel type of invariance. Our study demonstrates the power of using a data-driven deep learning approach to systematically characterize neuronal invariances. By applying this method across the visual hierarchy, cell types, and sensory modalities, we can decipher how latent variables are robustly extracted from natural scenes, leading to a deeper understanding of generalization.
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spelling pubmed-100551192023-03-30 Bipartite invariance in mouse primary visual cortex Ding, Zhiwei Tran, Dat T. Ponder, Kayla Cobos, Erick Ding, Zhuokun Fahey, Paul G. Wang, Eric Muhammad, Taliah Fu, Jiakun Cadena, Santiago A. Papadopoulos, Stelios Patel, Saumil Franke, Katrin Reimer, Jacob Sinz, Fabian H. Ecker, Alexander S. Pitkow, Xaq Tolias, Andreas S. bioRxiv Article A defining characteristic of intelligent systems, whether natural or artificial, is the ability to generalize and infer behaviorally relevant latent causes from high-dimensional sensory input, despite significant variations in the environment. To understand how brains achieve generalization, it is crucial to identify the features to which neurons respond selectively and invariantly. However, the high-dimensional nature of visual inputs, the non-linearity of information processing in the brain, and limited experimental time make it challenging to systematically characterize neuronal tuning and invariances, especially for natural stimuli. Here, we extended “inception loops” — a paradigm that iterates between large-scale recordings, neural predictive models, and in silico experiments followed by in vivo verification — to systematically characterize single neuron invariances in the mouse primary visual cortex. Using the predictive model we synthesized Diverse Exciting Inputs (DEIs), a set of inputs that differ substantially from each other while each driving a target neuron strongly, and verified these DEIs’ efficacy in vivo. We discovered a novel bipartite invariance: one portion of the receptive field encoded phase-invariant texture-like patterns, while the other portion encoded a fixed spatial pattern. Our analysis revealed that the division between the fixed and invariant portions of the receptive fields aligns with object boundaries defined by spatial frequency differences present in highly activating natural images. These findings suggest that bipartite invariance might play a role in segmentation by detecting texture-defined object boundaries, independent of the phase of the texture. We also replicated these bipartite DEIs in the functional connectomics MICrONs data set, which opens the way towards a circuit-level mechanistic understanding of this novel type of invariance. Our study demonstrates the power of using a data-driven deep learning approach to systematically characterize neuronal invariances. By applying this method across the visual hierarchy, cell types, and sensory modalities, we can decipher how latent variables are robustly extracted from natural scenes, leading to a deeper understanding of generalization. Cold Spring Harbor Laboratory 2023-03-16 /pmc/articles/PMC10055119/ /pubmed/36993218 http://dx.doi.org/10.1101/2023.03.15.532836 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Ding, Zhiwei
Tran, Dat T.
Ponder, Kayla
Cobos, Erick
Ding, Zhuokun
Fahey, Paul G.
Wang, Eric
Muhammad, Taliah
Fu, Jiakun
Cadena, Santiago A.
Papadopoulos, Stelios
Patel, Saumil
Franke, Katrin
Reimer, Jacob
Sinz, Fabian H.
Ecker, Alexander S.
Pitkow, Xaq
Tolias, Andreas S.
Bipartite invariance in mouse primary visual cortex
title Bipartite invariance in mouse primary visual cortex
title_full Bipartite invariance in mouse primary visual cortex
title_fullStr Bipartite invariance in mouse primary visual cortex
title_full_unstemmed Bipartite invariance in mouse primary visual cortex
title_short Bipartite invariance in mouse primary visual cortex
title_sort bipartite invariance in mouse primary visual cortex
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10055119/
https://www.ncbi.nlm.nih.gov/pubmed/36993218
http://dx.doi.org/10.1101/2023.03.15.532836
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