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Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer

Nature killer (NK) cells are increasingly considered important in tumor microenvironment, but their role in predicting the prognosis of ovarian cancer has not been revealed. This study aimed to develop a prognostic risk model for ovarian cancer based on NK cells. Firstly, differentially expressed ge...

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Detalles Bibliográficos
Autores principales: Zhang, Chengxi, Qin, Chuanmei, Lin, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10055736/
https://www.ncbi.nlm.nih.gov/pubmed/36983585
http://dx.doi.org/10.3390/jpm13030403
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author Zhang, Chengxi
Qin, Chuanmei
Lin, Yi
author_facet Zhang, Chengxi
Qin, Chuanmei
Lin, Yi
author_sort Zhang, Chengxi
collection PubMed
description Nature killer (NK) cells are increasingly considered important in tumor microenvironment, but their role in predicting the prognosis of ovarian cancer has not been revealed. This study aimed to develop a prognostic risk model for ovarian cancer based on NK cells. Firstly, differentially expressed genes (DEGs) of NK cells were found by single-cell RNA-sequencing dataset analysis. Based on six NK-cell DEGs identified by univariable, Lasso and multivariable Cox regression analyses, a prognostic risk model for serous ovarian cancer was developed in the TCGA cohort. This model was then validated in three external cohorts, and evaluated as an independent prognostic factor by multivariable Cox regression analysis together with clinical characteristics. With the investigation of the underlying mechanism, a relation between a higher risk score of this model and more immune activities in tumor microenvironment was revealed. Furthermore, a detailed inspection of infiltrated immunocytes indicated that not only quantity, but also the functional state of these immunocytes might affect prognostic risk. Additionally, the potential of this model to predict immunotherapeutic response was exhibited by evaluating the functional state of cytotoxic T lymphocytes. To conclude, this study introduced a novel prognostic risk model based on NK-cell DEGs, which might provide assistance for the personalized management of serous ovarian cancer patients.
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spelling pubmed-100557362023-03-30 Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer Zhang, Chengxi Qin, Chuanmei Lin, Yi J Pers Med Article Nature killer (NK) cells are increasingly considered important in tumor microenvironment, but their role in predicting the prognosis of ovarian cancer has not been revealed. This study aimed to develop a prognostic risk model for ovarian cancer based on NK cells. Firstly, differentially expressed genes (DEGs) of NK cells were found by single-cell RNA-sequencing dataset analysis. Based on six NK-cell DEGs identified by univariable, Lasso and multivariable Cox regression analyses, a prognostic risk model for serous ovarian cancer was developed in the TCGA cohort. This model was then validated in three external cohorts, and evaluated as an independent prognostic factor by multivariable Cox regression analysis together with clinical characteristics. With the investigation of the underlying mechanism, a relation between a higher risk score of this model and more immune activities in tumor microenvironment was revealed. Furthermore, a detailed inspection of infiltrated immunocytes indicated that not only quantity, but also the functional state of these immunocytes might affect prognostic risk. Additionally, the potential of this model to predict immunotherapeutic response was exhibited by evaluating the functional state of cytotoxic T lymphocytes. To conclude, this study introduced a novel prognostic risk model based on NK-cell DEGs, which might provide assistance for the personalized management of serous ovarian cancer patients. MDPI 2023-02-24 /pmc/articles/PMC10055736/ /pubmed/36983585 http://dx.doi.org/10.3390/jpm13030403 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Chengxi
Qin, Chuanmei
Lin, Yi
Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer
title Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer
title_full Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer
title_fullStr Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer
title_full_unstemmed Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer
title_short Development and Validation of a Prognostic Risk Model Based on Nature Killer Cells for Serous Ovarian Cancer
title_sort development and validation of a prognostic risk model based on nature killer cells for serous ovarian cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10055736/
https://www.ncbi.nlm.nih.gov/pubmed/36983585
http://dx.doi.org/10.3390/jpm13030403
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