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Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification

The polymerase chain reaction (PCR) is essential in nucleic acid amplification tests and is widely used in many applications such as infectious disease detection, tumor screening, and food safety testing; however, most PCR devices have inefficient heating and cooling ramp rates for the solution, whi...

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Autores principales: An, Yi-Quan, Huang, Shao-Lei, Xi, Bang-Chao, Gong, Xiang-Lian, Ji, Jun-Hao, Hu, You, Ding, Yi-Jie, Zhang, Dong-Xu, Ge, Sheng-Xiang, Zhang, Jun, Xia, Ning-Shao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10058542/
https://www.ncbi.nlm.nih.gov/pubmed/36985065
http://dx.doi.org/10.3390/mi14030658
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author An, Yi-Quan
Huang, Shao-Lei
Xi, Bang-Chao
Gong, Xiang-Lian
Ji, Jun-Hao
Hu, You
Ding, Yi-Jie
Zhang, Dong-Xu
Ge, Sheng-Xiang
Zhang, Jun
Xia, Ning-Shao
author_facet An, Yi-Quan
Huang, Shao-Lei
Xi, Bang-Chao
Gong, Xiang-Lian
Ji, Jun-Hao
Hu, You
Ding, Yi-Jie
Zhang, Dong-Xu
Ge, Sheng-Xiang
Zhang, Jun
Xia, Ning-Shao
author_sort An, Yi-Quan
collection PubMed
description The polymerase chain reaction (PCR) is essential in nucleic acid amplification tests and is widely used in many applications such as infectious disease detection, tumor screening, and food safety testing; however, most PCR devices have inefficient heating and cooling ramp rates for the solution, which significantly limit their application in special scenarios such as hospital emergencies, airports, and customs. Here, we propose a temperature control strategy to significantly increase the ramp rates for the solution temperature by switching microfluidic chips between multiple temperature zones and excessively increasing the temperature difference between temperature zones and the solution; accordingly, we have designed an ultrafast thermocycler. The results showed that the ramp rates of the solution temperature are a linear function of temperature differences within a range, and a larger temperature difference would result in faster ramp rates. The maximum heating and cooling ramp rates of the 25 μL solution reached 24.12 °C/s and 25.28 °C/s, respectively, and the average ramp rate was 13.33 °C/s, 6–8 times higher than that of conventional commercial PCR devices. The thermocycler achieved 9 min (1 min pre-denaturation + 45 PCR cycles) ultrafast nucleic acid amplification, shortening the time by 92% compared to the conventional 120 min nucleic acid amplification, and has the potential to be used for rapid nucleic acid detection.
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spelling pubmed-100585422023-03-30 Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification An, Yi-Quan Huang, Shao-Lei Xi, Bang-Chao Gong, Xiang-Lian Ji, Jun-Hao Hu, You Ding, Yi-Jie Zhang, Dong-Xu Ge, Sheng-Xiang Zhang, Jun Xia, Ning-Shao Micromachines (Basel) Article The polymerase chain reaction (PCR) is essential in nucleic acid amplification tests and is widely used in many applications such as infectious disease detection, tumor screening, and food safety testing; however, most PCR devices have inefficient heating and cooling ramp rates for the solution, which significantly limit their application in special scenarios such as hospital emergencies, airports, and customs. Here, we propose a temperature control strategy to significantly increase the ramp rates for the solution temperature by switching microfluidic chips between multiple temperature zones and excessively increasing the temperature difference between temperature zones and the solution; accordingly, we have designed an ultrafast thermocycler. The results showed that the ramp rates of the solution temperature are a linear function of temperature differences within a range, and a larger temperature difference would result in faster ramp rates. The maximum heating and cooling ramp rates of the 25 μL solution reached 24.12 °C/s and 25.28 °C/s, respectively, and the average ramp rate was 13.33 °C/s, 6–8 times higher than that of conventional commercial PCR devices. The thermocycler achieved 9 min (1 min pre-denaturation + 45 PCR cycles) ultrafast nucleic acid amplification, shortening the time by 92% compared to the conventional 120 min nucleic acid amplification, and has the potential to be used for rapid nucleic acid detection. MDPI 2023-03-15 /pmc/articles/PMC10058542/ /pubmed/36985065 http://dx.doi.org/10.3390/mi14030658 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
An, Yi-Quan
Huang, Shao-Lei
Xi, Bang-Chao
Gong, Xiang-Lian
Ji, Jun-Hao
Hu, You
Ding, Yi-Jie
Zhang, Dong-Xu
Ge, Sheng-Xiang
Zhang, Jun
Xia, Ning-Shao
Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification
title Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification
title_full Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification
title_fullStr Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification
title_full_unstemmed Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification
title_short Ultrafast Microfluidic PCR Thermocycler for Nucleic Acid Amplification
title_sort ultrafast microfluidic pcr thermocycler for nucleic acid amplification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10058542/
https://www.ncbi.nlm.nih.gov/pubmed/36985065
http://dx.doi.org/10.3390/mi14030658
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