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Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes

This study numerically demonstrates the light absorption spectra of each base of DNA-wrapped single-walled carbon nanotubes (SWCNTs). Previous experimental and theoretical studies show that the optical properties of these composites are different from the bare SWCNTs. In this work, we investigated t...

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Autores principales: Taira, Hisao, Miyashiro, Daisuke, Umemura, Kazuo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10058684/
https://www.ncbi.nlm.nih.gov/pubmed/36985692
http://dx.doi.org/10.3390/molecules28062719
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author Taira, Hisao
Miyashiro, Daisuke
Umemura, Kazuo
author_facet Taira, Hisao
Miyashiro, Daisuke
Umemura, Kazuo
author_sort Taira, Hisao
collection PubMed
description This study numerically demonstrates the light absorption spectra of each base of DNA-wrapped single-walled carbon nanotubes (SWCNTs). Previous experimental and theoretical studies show that the optical properties of these composites are different from the bare SWCNTs. In this work, we investigated the bases of DNA that influence optical properties. To obtain stable molecular states for studying optical properties, molecular dynamics calculations were performed. Additionally, light absorption spectra in the ultraviolet-to-near-infrared region of one type of base-wrapped (e.g., adenine-, thymine-, cytosine-, or guanine-wrapped) SWCNTs were investigated by utilizing the semi-empirical molecular orbital theory using SCIGRESS commercial software. This method can significantly reduce the calculation time compared to the ab initio molecular orbital method, making the handling of composites of bases and SWCNTs possible. We found that the largest peaks appear at a wavelength of around 300 nm for all the composites. Furthermore, we found that the light absorption spectra above 570 nm are strongly influenced by adenine and cytosine. Thus, our computational results provide insight into the optical properties and the effects of base–SWCNTs that are difficult to investigate experimentally under the influence of solvents and various molecules.
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spelling pubmed-100586842023-03-30 Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes Taira, Hisao Miyashiro, Daisuke Umemura, Kazuo Molecules Article This study numerically demonstrates the light absorption spectra of each base of DNA-wrapped single-walled carbon nanotubes (SWCNTs). Previous experimental and theoretical studies show that the optical properties of these composites are different from the bare SWCNTs. In this work, we investigated the bases of DNA that influence optical properties. To obtain stable molecular states for studying optical properties, molecular dynamics calculations were performed. Additionally, light absorption spectra in the ultraviolet-to-near-infrared region of one type of base-wrapped (e.g., adenine-, thymine-, cytosine-, or guanine-wrapped) SWCNTs were investigated by utilizing the semi-empirical molecular orbital theory using SCIGRESS commercial software. This method can significantly reduce the calculation time compared to the ab initio molecular orbital method, making the handling of composites of bases and SWCNTs possible. We found that the largest peaks appear at a wavelength of around 300 nm for all the composites. Furthermore, we found that the light absorption spectra above 570 nm are strongly influenced by adenine and cytosine. Thus, our computational results provide insight into the optical properties and the effects of base–SWCNTs that are difficult to investigate experimentally under the influence of solvents and various molecules. MDPI 2023-03-17 /pmc/articles/PMC10058684/ /pubmed/36985692 http://dx.doi.org/10.3390/molecules28062719 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Taira, Hisao
Miyashiro, Daisuke
Umemura, Kazuo
Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes
title Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes
title_full Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes
title_fullStr Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes
title_full_unstemmed Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes
title_short Numerical Analysis for Light Absorption Spectra of the Base of DNA-Wrapped Single-Walled Carbon Nanotubes
title_sort numerical analysis for light absorption spectra of the base of dna-wrapped single-walled carbon nanotubes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10058684/
https://www.ncbi.nlm.nih.gov/pubmed/36985692
http://dx.doi.org/10.3390/molecules28062719
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