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Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action

The official classification of newly discovered or long-known unassigned viruses by the International Committee on Taxonomy of Viruses (ICTV) requires the deposition of coding-complete or -near-complete virus genome sequences in GenBank to fulfill a requirement of the taxonomic proposal (TaxoProp) p...

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Autores principales: Kuhn, Jens H., Bradfute, Steven B., Calisher, Charles H., Klempa, Boris, Klingström, Jonas, Laenen, Lies, Palacios, Gustavo, Schmaljohn, Connie S., Tischler, Nicole D., Maes, Piet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10059669/
https://www.ncbi.nlm.nih.gov/pubmed/36992369
http://dx.doi.org/10.3390/v15030660
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author Kuhn, Jens H.
Bradfute, Steven B.
Calisher, Charles H.
Klempa, Boris
Klingström, Jonas
Laenen, Lies
Palacios, Gustavo
Schmaljohn, Connie S.
Tischler, Nicole D.
Maes, Piet
author_facet Kuhn, Jens H.
Bradfute, Steven B.
Calisher, Charles H.
Klempa, Boris
Klingström, Jonas
Laenen, Lies
Palacios, Gustavo
Schmaljohn, Connie S.
Tischler, Nicole D.
Maes, Piet
author_sort Kuhn, Jens H.
collection PubMed
description The official classification of newly discovered or long-known unassigned viruses by the International Committee on Taxonomy of Viruses (ICTV) requires the deposition of coding-complete or -near-complete virus genome sequences in GenBank to fulfill a requirement of the taxonomic proposal (TaxoProp) process. However, this requirement is fairly new; thus, genomic sequence information is fragmented or absent for many already-classified viruses. As a result, taxon-wide modern phylogenetic analyses are often challenging, if not impossible. This problem is particularly eminent among viruses with segmented genomes, such as bunyavirals, which were frequently classified solely based on single-segment sequence information. To solve this issue for one bunyaviral family, Hantaviridae, we call on the community to provide additional sequence information for incompletely sequenced classified viruses by mid-June 2023. Such sequence information may be sufficient to prevent their possible declassification during the ongoing efforts to establish a coherent, consistent, and evolution-based hantavirid taxonomy.
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spelling pubmed-100596692023-03-30 Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action Kuhn, Jens H. Bradfute, Steven B. Calisher, Charles H. Klempa, Boris Klingström, Jonas Laenen, Lies Palacios, Gustavo Schmaljohn, Connie S. Tischler, Nicole D. Maes, Piet Viruses Commentary The official classification of newly discovered or long-known unassigned viruses by the International Committee on Taxonomy of Viruses (ICTV) requires the deposition of coding-complete or -near-complete virus genome sequences in GenBank to fulfill a requirement of the taxonomic proposal (TaxoProp) process. However, this requirement is fairly new; thus, genomic sequence information is fragmented or absent for many already-classified viruses. As a result, taxon-wide modern phylogenetic analyses are often challenging, if not impossible. This problem is particularly eminent among viruses with segmented genomes, such as bunyavirals, which were frequently classified solely based on single-segment sequence information. To solve this issue for one bunyaviral family, Hantaviridae, we call on the community to provide additional sequence information for incompletely sequenced classified viruses by mid-June 2023. Such sequence information may be sufficient to prevent their possible declassification during the ongoing efforts to establish a coherent, consistent, and evolution-based hantavirid taxonomy. MDPI 2023-02-28 /pmc/articles/PMC10059669/ /pubmed/36992369 http://dx.doi.org/10.3390/v15030660 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Commentary
Kuhn, Jens H.
Bradfute, Steven B.
Calisher, Charles H.
Klempa, Boris
Klingström, Jonas
Laenen, Lies
Palacios, Gustavo
Schmaljohn, Connie S.
Tischler, Nicole D.
Maes, Piet
Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action
title Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action
title_full Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action
title_fullStr Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action
title_full_unstemmed Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action
title_short Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action
title_sort pending reorganization of hantaviridae to include only completely sequenced viruses: a call to action
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10059669/
https://www.ncbi.nlm.nih.gov/pubmed/36992369
http://dx.doi.org/10.3390/v15030660
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