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Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action
The official classification of newly discovered or long-known unassigned viruses by the International Committee on Taxonomy of Viruses (ICTV) requires the deposition of coding-complete or -near-complete virus genome sequences in GenBank to fulfill a requirement of the taxonomic proposal (TaxoProp) p...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10059669/ https://www.ncbi.nlm.nih.gov/pubmed/36992369 http://dx.doi.org/10.3390/v15030660 |
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author | Kuhn, Jens H. Bradfute, Steven B. Calisher, Charles H. Klempa, Boris Klingström, Jonas Laenen, Lies Palacios, Gustavo Schmaljohn, Connie S. Tischler, Nicole D. Maes, Piet |
author_facet | Kuhn, Jens H. Bradfute, Steven B. Calisher, Charles H. Klempa, Boris Klingström, Jonas Laenen, Lies Palacios, Gustavo Schmaljohn, Connie S. Tischler, Nicole D. Maes, Piet |
author_sort | Kuhn, Jens H. |
collection | PubMed |
description | The official classification of newly discovered or long-known unassigned viruses by the International Committee on Taxonomy of Viruses (ICTV) requires the deposition of coding-complete or -near-complete virus genome sequences in GenBank to fulfill a requirement of the taxonomic proposal (TaxoProp) process. However, this requirement is fairly new; thus, genomic sequence information is fragmented or absent for many already-classified viruses. As a result, taxon-wide modern phylogenetic analyses are often challenging, if not impossible. This problem is particularly eminent among viruses with segmented genomes, such as bunyavirals, which were frequently classified solely based on single-segment sequence information. To solve this issue for one bunyaviral family, Hantaviridae, we call on the community to provide additional sequence information for incompletely sequenced classified viruses by mid-June 2023. Such sequence information may be sufficient to prevent their possible declassification during the ongoing efforts to establish a coherent, consistent, and evolution-based hantavirid taxonomy. |
format | Online Article Text |
id | pubmed-10059669 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100596692023-03-30 Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action Kuhn, Jens H. Bradfute, Steven B. Calisher, Charles H. Klempa, Boris Klingström, Jonas Laenen, Lies Palacios, Gustavo Schmaljohn, Connie S. Tischler, Nicole D. Maes, Piet Viruses Commentary The official classification of newly discovered or long-known unassigned viruses by the International Committee on Taxonomy of Viruses (ICTV) requires the deposition of coding-complete or -near-complete virus genome sequences in GenBank to fulfill a requirement of the taxonomic proposal (TaxoProp) process. However, this requirement is fairly new; thus, genomic sequence information is fragmented or absent for many already-classified viruses. As a result, taxon-wide modern phylogenetic analyses are often challenging, if not impossible. This problem is particularly eminent among viruses with segmented genomes, such as bunyavirals, which were frequently classified solely based on single-segment sequence information. To solve this issue for one bunyaviral family, Hantaviridae, we call on the community to provide additional sequence information for incompletely sequenced classified viruses by mid-June 2023. Such sequence information may be sufficient to prevent their possible declassification during the ongoing efforts to establish a coherent, consistent, and evolution-based hantavirid taxonomy. MDPI 2023-02-28 /pmc/articles/PMC10059669/ /pubmed/36992369 http://dx.doi.org/10.3390/v15030660 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Commentary Kuhn, Jens H. Bradfute, Steven B. Calisher, Charles H. Klempa, Boris Klingström, Jonas Laenen, Lies Palacios, Gustavo Schmaljohn, Connie S. Tischler, Nicole D. Maes, Piet Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action |
title | Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action |
title_full | Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action |
title_fullStr | Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action |
title_full_unstemmed | Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action |
title_short | Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action |
title_sort | pending reorganization of hantaviridae to include only completely sequenced viruses: a call to action |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10059669/ https://www.ncbi.nlm.nih.gov/pubmed/36992369 http://dx.doi.org/10.3390/v15030660 |
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