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Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer

Background: Despite the significant survival benefits of anti-PD-1/PD-L1 immunotherapy, non-small cell lung cancer (NSCLC) remains one of the most common tumors and major causes of cancer-related deaths worldwide. Thus, there is an urgent need to identify new therapeutic targets for this refractory...

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Autores principales: Lai, Li-Ting, Ren, Yuan-Hui, Huai, Ya-Jun, Liu, Yu, Liu, Ying, Wang, Shan-Shan, Mei, Jin-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10060803/
https://www.ncbi.nlm.nih.gov/pubmed/37007961
http://dx.doi.org/10.3389/fgene.2023.1139994
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author Lai, Li-Ting
Ren, Yuan-Hui
Huai, Ya-Jun
Liu, Yu
Liu, Ying
Wang, Shan-Shan
Mei, Jin-Hong
author_facet Lai, Li-Ting
Ren, Yuan-Hui
Huai, Ya-Jun
Liu, Yu
Liu, Ying
Wang, Shan-Shan
Mei, Jin-Hong
author_sort Lai, Li-Ting
collection PubMed
description Background: Despite the significant survival benefits of anti-PD-1/PD-L1 immunotherapy, non-small cell lung cancer (NSCLC) remains one of the most common tumors and major causes of cancer-related deaths worldwide. Thus, there is an urgent need to identify new therapeutic targets for this refractory disease. Methods: In this study, microarray datasets GSE27262, GSE75037, GSE102287, and GSE21933 were integrated by Venn diagram. We performed functional clustering and pathway enrichment analyses using R. Through the STRING database and Cytoscape, we conducted protein-protein interaction (PPI) network analysis and identified the key genes, which were verified by the GEPIA2 and UALCAN portal. Validation of actin-binding protein anillin (ANLN) was performed by quantitative real-time polymerase chain reaction and Western blotting. Additionally, Kaplan-Meier methods were used to compute the survival analyses. Results: In total, 126 differentially expressed genes were identified, which were enriched in mitotic nuclear division, mitotic cell cycle G2/M transition, vasculogenesis, spindle, and peroxisome proliferator-activated receptor signaling pathway. 12 central node genes were identified in the PPI network complex. The survival analysis revealed that high transcriptional levels were associated with inferior survival in NSCLC patients. The clinical implication of ANLN was further explored; its protein expression showed a gradually increasing trend from grade I to III. Conclusion: These Key genes may be involved in the carcinogenesis and progression of NSCLC, which may serve as useful targets for NSCLC diagnosis and treatment.
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spelling pubmed-100608032023-03-31 Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer Lai, Li-Ting Ren, Yuan-Hui Huai, Ya-Jun Liu, Yu Liu, Ying Wang, Shan-Shan Mei, Jin-Hong Front Genet Genetics Background: Despite the significant survival benefits of anti-PD-1/PD-L1 immunotherapy, non-small cell lung cancer (NSCLC) remains one of the most common tumors and major causes of cancer-related deaths worldwide. Thus, there is an urgent need to identify new therapeutic targets for this refractory disease. Methods: In this study, microarray datasets GSE27262, GSE75037, GSE102287, and GSE21933 were integrated by Venn diagram. We performed functional clustering and pathway enrichment analyses using R. Through the STRING database and Cytoscape, we conducted protein-protein interaction (PPI) network analysis and identified the key genes, which were verified by the GEPIA2 and UALCAN portal. Validation of actin-binding protein anillin (ANLN) was performed by quantitative real-time polymerase chain reaction and Western blotting. Additionally, Kaplan-Meier methods were used to compute the survival analyses. Results: In total, 126 differentially expressed genes were identified, which were enriched in mitotic nuclear division, mitotic cell cycle G2/M transition, vasculogenesis, spindle, and peroxisome proliferator-activated receptor signaling pathway. 12 central node genes were identified in the PPI network complex. The survival analysis revealed that high transcriptional levels were associated with inferior survival in NSCLC patients. The clinical implication of ANLN was further explored; its protein expression showed a gradually increasing trend from grade I to III. Conclusion: These Key genes may be involved in the carcinogenesis and progression of NSCLC, which may serve as useful targets for NSCLC diagnosis and treatment. Frontiers Media S.A. 2023-03-16 /pmc/articles/PMC10060803/ /pubmed/37007961 http://dx.doi.org/10.3389/fgene.2023.1139994 Text en Copyright © 2023 Lai, Ren, Huai, Liu, Liu, Wang and Mei. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Lai, Li-Ting
Ren, Yuan-Hui
Huai, Ya-Jun
Liu, Yu
Liu, Ying
Wang, Shan-Shan
Mei, Jin-Hong
Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer
title Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer
title_full Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer
title_fullStr Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer
title_full_unstemmed Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer
title_short Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer
title_sort identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10060803/
https://www.ncbi.nlm.nih.gov/pubmed/37007961
http://dx.doi.org/10.3389/fgene.2023.1139994
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