The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China

Ligusticopsis acaulis, belonging to the family Apiaceae (Umbelliferae), is endemic to China. The complete chloroplast genome sequence of L. acaulis was assembled and annotated for the first time in this study. The results showed that the plastome was 148,509 bp in length and consisted of a pair of i...

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Autores principales: Niu, Junmei, Wang, Xinyue, Yue, Jiarui, Zhou, Shilin, Liu, Zhenwen, Zhou, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062233/
https://www.ncbi.nlm.nih.gov/pubmed/37006959
http://dx.doi.org/10.1080/23802359.2023.2191750
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author Niu, Junmei
Wang, Xinyue
Yue, Jiarui
Zhou, Shilin
Liu, Zhenwen
Zhou, Jing
author_facet Niu, Junmei
Wang, Xinyue
Yue, Jiarui
Zhou, Shilin
Liu, Zhenwen
Zhou, Jing
author_sort Niu, Junmei
collection PubMed
description Ligusticopsis acaulis, belonging to the family Apiaceae (Umbelliferae), is endemic to China. The complete chloroplast genome sequence of L. acaulis was assembled and annotated for the first time in this study. The results showed that the plastome was 148,509 bp in length and consisted of a pair of inverted repeat regions (IRs: 19,468 bp), a large single-copy region (LSC: 91,902 bp), and a small single-copy region (SSC: 17,671 bp). A total of 114 unique genes were annotated, including 80 protein-coding, 30 tRNA, and four rRNA genes. According to the phylogenetic analysis, L. acaulis belongs to the tribe Selineae, with a close relationship to Ligusticum hispidum (Franch.) Wolff.
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spelling pubmed-100622332023-03-31 The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China Niu, Junmei Wang, Xinyue Yue, Jiarui Zhou, Shilin Liu, Zhenwen Zhou, Jing Mitochondrial DNA B Resour Plastome Announcement Ligusticopsis acaulis, belonging to the family Apiaceae (Umbelliferae), is endemic to China. The complete chloroplast genome sequence of L. acaulis was assembled and annotated for the first time in this study. The results showed that the plastome was 148,509 bp in length and consisted of a pair of inverted repeat regions (IRs: 19,468 bp), a large single-copy region (LSC: 91,902 bp), and a small single-copy region (SSC: 17,671 bp). A total of 114 unique genes were annotated, including 80 protein-coding, 30 tRNA, and four rRNA genes. According to the phylogenetic analysis, L. acaulis belongs to the tribe Selineae, with a close relationship to Ligusticum hispidum (Franch.) Wolff. Taylor & Francis 2023-03-28 /pmc/articles/PMC10062233/ /pubmed/37006959 http://dx.doi.org/10.1080/23802359.2023.2191750 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Announcement
Niu, Junmei
Wang, Xinyue
Yue, Jiarui
Zhou, Shilin
Liu, Zhenwen
Zhou, Jing
The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China
title The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China
title_full The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China
title_fullStr The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China
title_full_unstemmed The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China
title_short The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China
title_sort complete chloroplast genome of ligusticopsis acaulis (shan et sheh) pimenov (apiaceae), an endemic species from china
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062233/
https://www.ncbi.nlm.nih.gov/pubmed/37006959
http://dx.doi.org/10.1080/23802359.2023.2191750
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