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CIRO: COVID-19 infection risk ontology

Public health authorities perform contact tracing for highly contagious agents to identify close contacts with the infected cases. However, during the pandemic caused by coronavirus disease 2019 (COVID-19), this operation was not employed in countries with high patient volumes. Meanwhile, the Japane...

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Autores principales: Egami, Shusaku, Yamamoto, Yasunori, Ohmukai, Ikki, Okumura, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062577/
https://www.ncbi.nlm.nih.gov/pubmed/36996094
http://dx.doi.org/10.1371/journal.pone.0282291
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author Egami, Shusaku
Yamamoto, Yasunori
Ohmukai, Ikki
Okumura, Takashi
author_facet Egami, Shusaku
Yamamoto, Yasunori
Ohmukai, Ikki
Okumura, Takashi
author_sort Egami, Shusaku
collection PubMed
description Public health authorities perform contact tracing for highly contagious agents to identify close contacts with the infected cases. However, during the pandemic caused by coronavirus disease 2019 (COVID-19), this operation was not employed in countries with high patient volumes. Meanwhile, the Japanese government conducted this operation, thereby contributing to the control of infections, at the cost of arduous manual labor by public health officials. To ease the burden of the officials, this study attempted to automate the assessment of each person’s infection risk through an ontology, called COVID-19 Infection Risk Ontology (CIRO). This ontology expresses infection risks of COVID-19 formulated by the Japanese government, toward automated assessment of infection risks of individuals, using Resource Description Framework (RDF) and SPARQL (SPARQL Protocol and RDF Query Language) queries. For evaluation, we demonstrated that the knowledge graph built could infer the risks, formulated by the government. Moreover, we conducted reasoning experiments to analyze the computational efficiency. The experiments demonstrated usefulness of the knowledge processing, and identified issues left for deployment.
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spelling pubmed-100625772023-03-31 CIRO: COVID-19 infection risk ontology Egami, Shusaku Yamamoto, Yasunori Ohmukai, Ikki Okumura, Takashi PLoS One Research Article Public health authorities perform contact tracing for highly contagious agents to identify close contacts with the infected cases. However, during the pandemic caused by coronavirus disease 2019 (COVID-19), this operation was not employed in countries with high patient volumes. Meanwhile, the Japanese government conducted this operation, thereby contributing to the control of infections, at the cost of arduous manual labor by public health officials. To ease the burden of the officials, this study attempted to automate the assessment of each person’s infection risk through an ontology, called COVID-19 Infection Risk Ontology (CIRO). This ontology expresses infection risks of COVID-19 formulated by the Japanese government, toward automated assessment of infection risks of individuals, using Resource Description Framework (RDF) and SPARQL (SPARQL Protocol and RDF Query Language) queries. For evaluation, we demonstrated that the knowledge graph built could infer the risks, formulated by the government. Moreover, we conducted reasoning experiments to analyze the computational efficiency. The experiments demonstrated usefulness of the knowledge processing, and identified issues left for deployment. Public Library of Science 2023-03-30 /pmc/articles/PMC10062577/ /pubmed/36996094 http://dx.doi.org/10.1371/journal.pone.0282291 Text en © 2023 Egami et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Egami, Shusaku
Yamamoto, Yasunori
Ohmukai, Ikki
Okumura, Takashi
CIRO: COVID-19 infection risk ontology
title CIRO: COVID-19 infection risk ontology
title_full CIRO: COVID-19 infection risk ontology
title_fullStr CIRO: COVID-19 infection risk ontology
title_full_unstemmed CIRO: COVID-19 infection risk ontology
title_short CIRO: COVID-19 infection risk ontology
title_sort ciro: covid-19 infection risk ontology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062577/
https://www.ncbi.nlm.nih.gov/pubmed/36996094
http://dx.doi.org/10.1371/journal.pone.0282291
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