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CellML 2.0.1
We present here CellML 2.0.1, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equa...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10063175/ http://dx.doi.org/10.1515/jib-2023-0003 |
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author | Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh |
author_facet | Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh |
author_sort | Clerx, Michael |
collection | PubMed |
description | We present here CellML 2.0.1, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations giving relationships between those variables. Models may import other models to create systems of increasing complexity. CellML 2.0.1 is defined by the normative specification presented here, prescribing the CellML syntax and the rules by which it should be used. The normative specification is intended primarily for the developers of software tools which directly consume CellML syntax. Users of CellML models may prefer to browse the informative rendering of the specification (https://cellml.org/specifications/cellml_2.0/) which extends the normative specification with explanations of the rules combined with examples of their usage. This version improves the identification of rule statements and corrects errata present in the CellML 2.0 specification. |
format | Online Article Text |
id | pubmed-10063175 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-100631752023-03-31 CellML 2.0.1 Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh J Integr Bioinform Article We present here CellML 2.0.1, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations giving relationships between those variables. Models may import other models to create systems of increasing complexity. CellML 2.0.1 is defined by the normative specification presented here, prescribing the CellML syntax and the rules by which it should be used. The normative specification is intended primarily for the developers of software tools which directly consume CellML syntax. Users of CellML models may prefer to browse the informative rendering of the specification (https://cellml.org/specifications/cellml_2.0/) which extends the normative specification with explanations of the rules combined with examples of their usage. This version improves the identification of rule statements and corrects errata present in the CellML 2.0 specification. De Gruyter 2023-03-17 /pmc/articles/PMC10063175/ http://dx.doi.org/10.1515/jib-2023-0003 Text en © 2023 the author(s), published by De Gruyter, Berlin/Boston https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Article Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh CellML 2.0.1 |
title | CellML 2.0.1 |
title_full | CellML 2.0.1 |
title_fullStr | CellML 2.0.1 |
title_full_unstemmed | CellML 2.0.1 |
title_short | CellML 2.0.1 |
title_sort | cellml 2.0.1 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10063175/ http://dx.doi.org/10.1515/jib-2023-0003 |
work_keys_str_mv | AT clerxmichael cellml201 AT coolingmichaelt cellml201 AT cooperjonathan cellml201 AT garnyalan cellml201 AT moylekeri cellml201 AT nickersondavidp cellml201 AT nielsenpoulmf cellml201 AT sorbyhugh cellml201 |