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Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes

Aiming at the problems of long time, high cost, invasive sampling damage, and easy emergence of drug resistance in lung cancer gene detection, a reliable and non-invasive prognostic method is proposed. Under the guidance of weakly supervised learning, deep metric learning and graph clustering method...

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Autores principales: Ren, Xueting, Jia, Liye, Zhao, Zijuan, Qiang, Yan, Wu, Wei, Han, Peng, Zhao, Juanjuan, Sun, Jingyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10063585/
https://www.ncbi.nlm.nih.gov/pubmed/36997586
http://dx.doi.org/10.1038/s41598-023-32301-4
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author Ren, Xueting
Jia, Liye
Zhao, Zijuan
Qiang, Yan
Wu, Wei
Han, Peng
Zhao, Juanjuan
Sun, Jingyu
author_facet Ren, Xueting
Jia, Liye
Zhao, Zijuan
Qiang, Yan
Wu, Wei
Han, Peng
Zhao, Juanjuan
Sun, Jingyu
author_sort Ren, Xueting
collection PubMed
description Aiming at the problems of long time, high cost, invasive sampling damage, and easy emergence of drug resistance in lung cancer gene detection, a reliable and non-invasive prognostic method is proposed. Under the guidance of weakly supervised learning, deep metric learning and graph clustering methods are used to learn higher-level abstract features in CT imaging features. The unlabeled data is dynamically updated through the k-nearest label update strategy, and the unlabeled data is transformed into weak label data and continue to update the process of strong label data to optimize the clustering results and establish a classification model for predicting new subtypes of lung cancer imaging. Five imaging subtypes are confirmed on the lung cancer dataset containing CT, clinical and genetic information downloaded from the TCIA lung cancer database. The successful establishment of the new model has a significant accuracy rate for subtype classification (ACC = 0.9793), and the use of CT sequence images, gene expression, DNA methylation and gene mutation data from the cooperative hospital in Shanxi Province proves the biomedical value of this method. The proposed method also can comprehensively evaluate intratumoral heterogeneity based on the correlation between the final lung CT imaging features and specific molecular subtypes.
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spelling pubmed-100635852023-04-01 Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes Ren, Xueting Jia, Liye Zhao, Zijuan Qiang, Yan Wu, Wei Han, Peng Zhao, Juanjuan Sun, Jingyu Sci Rep Article Aiming at the problems of long time, high cost, invasive sampling damage, and easy emergence of drug resistance in lung cancer gene detection, a reliable and non-invasive prognostic method is proposed. Under the guidance of weakly supervised learning, deep metric learning and graph clustering methods are used to learn higher-level abstract features in CT imaging features. The unlabeled data is dynamically updated through the k-nearest label update strategy, and the unlabeled data is transformed into weak label data and continue to update the process of strong label data to optimize the clustering results and establish a classification model for predicting new subtypes of lung cancer imaging. Five imaging subtypes are confirmed on the lung cancer dataset containing CT, clinical and genetic information downloaded from the TCIA lung cancer database. The successful establishment of the new model has a significant accuracy rate for subtype classification (ACC = 0.9793), and the use of CT sequence images, gene expression, DNA methylation and gene mutation data from the cooperative hospital in Shanxi Province proves the biomedical value of this method. The proposed method also can comprehensively evaluate intratumoral heterogeneity based on the correlation between the final lung CT imaging features and specific molecular subtypes. Nature Publishing Group UK 2023-03-30 /pmc/articles/PMC10063585/ /pubmed/36997586 http://dx.doi.org/10.1038/s41598-023-32301-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ren, Xueting
Jia, Liye
Zhao, Zijuan
Qiang, Yan
Wu, Wei
Han, Peng
Zhao, Juanjuan
Sun, Jingyu
Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes
title Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes
title_full Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes
title_fullStr Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes
title_full_unstemmed Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes
title_short Weakly supervised label propagation algorithm classifies lung cancer imaging subtypes
title_sort weakly supervised label propagation algorithm classifies lung cancer imaging subtypes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10063585/
https://www.ncbi.nlm.nih.gov/pubmed/36997586
http://dx.doi.org/10.1038/s41598-023-32301-4
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