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IsletSwipe, a mobile platform for expert opinion exchange on islet graft images

We previously developed a deep learning-based web service (IsletNet) for an automated counting of isolated pancreatic islets. The neural network training is limited by the absent consensus on the ground truth annotations. Here, we present a platform (IsletSwipe) for an exchange of graphical opinions...

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Autores principales: Habart, David, Koza, Adam, Leontovyc, Ivan, Kosinova, Lucie, Berkova, Zuzana, Kriz, Jan, Zacharovova, Klara, Brinkhof, Bas, Cornelissen, Dirk-Jan, Magrane, Nicholas, Bittenglova, Katerina, Capek, Martin, Valecka, Jan, Habartova, Alena, Saudek, František
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10064927/
https://www.ncbi.nlm.nih.gov/pubmed/36987915
http://dx.doi.org/10.1080/19382014.2023.2189873
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author Habart, David
Koza, Adam
Leontovyc, Ivan
Kosinova, Lucie
Berkova, Zuzana
Kriz, Jan
Zacharovova, Klara
Brinkhof, Bas
Cornelissen, Dirk-Jan
Magrane, Nicholas
Bittenglova, Katerina
Capek, Martin
Valecka, Jan
Habartova, Alena
Saudek, František
author_facet Habart, David
Koza, Adam
Leontovyc, Ivan
Kosinova, Lucie
Berkova, Zuzana
Kriz, Jan
Zacharovova, Klara
Brinkhof, Bas
Cornelissen, Dirk-Jan
Magrane, Nicholas
Bittenglova, Katerina
Capek, Martin
Valecka, Jan
Habartova, Alena
Saudek, František
author_sort Habart, David
collection PubMed
description We previously developed a deep learning-based web service (IsletNet) for an automated counting of isolated pancreatic islets. The neural network training is limited by the absent consensus on the ground truth annotations. Here, we present a platform (IsletSwipe) for an exchange of graphical opinions among experts to facilitate the consensus formation. The platform consists of a web interface and a mobile application. In a small pilot study, we demonstrate the functionalities and the use case scenarios of the platform. Nine experts from three centers validated the drawing tools, tested precision and consistency of the expert contour drawing, and evaluated user experience. Eight experts from two centers proceeded to evaluate additional images to demonstrate the following two use case scenarios. The Validation scenario involves an automated selection of images and islets for the expert scrutiny. It is scalable (more experts, images, and islets may readily be added) and can be applied to independent validation of islet contours from various sources. The Inquiry scenario serves the ground truth generating expert in seeking assistance from peers to achieve consensus on challenging cases during the preparation for IsletNet training. This scenario is limited to a small number of manually selected images and islets. The experts gained an opportunity to influence IsletNet training and to compare other experts’ opinions with their own. The ground truth-generating expert obtained feedback for future IsletNet training. IsletSwipe is a suitable tool for the consensus finding. Experts from additional centers are welcome to participate.
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spelling pubmed-100649272023-04-01 IsletSwipe, a mobile platform for expert opinion exchange on islet graft images Habart, David Koza, Adam Leontovyc, Ivan Kosinova, Lucie Berkova, Zuzana Kriz, Jan Zacharovova, Klara Brinkhof, Bas Cornelissen, Dirk-Jan Magrane, Nicholas Bittenglova, Katerina Capek, Martin Valecka, Jan Habartova, Alena Saudek, František Islets Research Article We previously developed a deep learning-based web service (IsletNet) for an automated counting of isolated pancreatic islets. The neural network training is limited by the absent consensus on the ground truth annotations. Here, we present a platform (IsletSwipe) for an exchange of graphical opinions among experts to facilitate the consensus formation. The platform consists of a web interface and a mobile application. In a small pilot study, we demonstrate the functionalities and the use case scenarios of the platform. Nine experts from three centers validated the drawing tools, tested precision and consistency of the expert contour drawing, and evaluated user experience. Eight experts from two centers proceeded to evaluate additional images to demonstrate the following two use case scenarios. The Validation scenario involves an automated selection of images and islets for the expert scrutiny. It is scalable (more experts, images, and islets may readily be added) and can be applied to independent validation of islet contours from various sources. The Inquiry scenario serves the ground truth generating expert in seeking assistance from peers to achieve consensus on challenging cases during the preparation for IsletNet training. This scenario is limited to a small number of manually selected images and islets. The experts gained an opportunity to influence IsletNet training and to compare other experts’ opinions with their own. The ground truth-generating expert obtained feedback for future IsletNet training. IsletSwipe is a suitable tool for the consensus finding. Experts from additional centers are welcome to participate. Taylor & Francis 2023-03-29 /pmc/articles/PMC10064927/ /pubmed/36987915 http://dx.doi.org/10.1080/19382014.2023.2189873 Text en © 2023 IKEM. Published with license by Taylor & Francis Group, LLC. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Habart, David
Koza, Adam
Leontovyc, Ivan
Kosinova, Lucie
Berkova, Zuzana
Kriz, Jan
Zacharovova, Klara
Brinkhof, Bas
Cornelissen, Dirk-Jan
Magrane, Nicholas
Bittenglova, Katerina
Capek, Martin
Valecka, Jan
Habartova, Alena
Saudek, František
IsletSwipe, a mobile platform for expert opinion exchange on islet graft images
title IsletSwipe, a mobile platform for expert opinion exchange on islet graft images
title_full IsletSwipe, a mobile platform for expert opinion exchange on islet graft images
title_fullStr IsletSwipe, a mobile platform for expert opinion exchange on islet graft images
title_full_unstemmed IsletSwipe, a mobile platform for expert opinion exchange on islet graft images
title_short IsletSwipe, a mobile platform for expert opinion exchange on islet graft images
title_sort isletswipe, a mobile platform for expert opinion exchange on islet graft images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10064927/
https://www.ncbi.nlm.nih.gov/pubmed/36987915
http://dx.doi.org/10.1080/19382014.2023.2189873
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