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A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS)
Involvement of many variables, uncertainty in treatment response, and inter-patient heterogeneity challenge objective decision-making in dynamic treatment regime (DTR) in oncology. Advanced machine learning analytics in conjunction with information-rich dense multi-omics data have the ability to ove...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10066294/ https://www.ncbi.nlm.nih.gov/pubmed/37002296 http://dx.doi.org/10.1038/s41598-023-32032-6 |
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author | Niraula, Dipesh Sun, Wenbo Jin, Jionghua Dinov, Ivo D. Cuneo, Kyle Jamaluddin, Jamalina Matuszak, Martha M. Luo, Yi Lawrence, Theodore S. Jolly, Shruti Ten Haken, Randall K. El Naqa, Issam |
author_facet | Niraula, Dipesh Sun, Wenbo Jin, Jionghua Dinov, Ivo D. Cuneo, Kyle Jamaluddin, Jamalina Matuszak, Martha M. Luo, Yi Lawrence, Theodore S. Jolly, Shruti Ten Haken, Randall K. El Naqa, Issam |
author_sort | Niraula, Dipesh |
collection | PubMed |
description | Involvement of many variables, uncertainty in treatment response, and inter-patient heterogeneity challenge objective decision-making in dynamic treatment regime (DTR) in oncology. Advanced machine learning analytics in conjunction with information-rich dense multi-omics data have the ability to overcome such challenges. We have developed a comprehensive artificial intelligence (AI)-based optimal decision-making framework for assisting oncologists in DTR. In this work, we demonstrate the proposed framework to Knowledge Based Response-Adaptive Radiotherapy (KBR-ART) applications by developing an interactive software tool entitled Adaptive Radiotherapy Clinical Decision Support (ARCliDS). ARCliDS is composed of two main components: Artifcial RT Environment (ARTE) and Optimal Decision Maker (ODM). ARTE is designed as a Markov decision process and modeled via supervised learning. Given a patient’s pre- and during-treatment information, ARTE can estimate treatment outcomes for a selected daily dosage value (radiation fraction size). ODM is formulated using reinforcement learning and is trained on ARTE. ODM can recommend optimal daily dosage adjustments to maximize the tumor local control probability and minimize the side effects. Graph Neural Networks (GNN) are applied to exploit the inter-feature relationships for improved modeling performance and a novel double GNN architecture is designed to avoid nonphysical treatment response. Datasets of size 117 and 292 were available from two clinical trials on adaptive RT in non-small cell lung cancer (NSCLC) patients and adaptive stereotactic body RT (SBRT) in hepatocellular carcinoma (HCC) patients, respectively. For training and validation, dense data with 297 features were available for 67 NSCLC patients and 110 features for 71 HCC patients. To increase the sample size for ODM training, we applied Generative Adversarial Networks to generate 10,000 synthetic patients. The ODM was trained on the synthetic patients and validated on the original dataset. We found that, Double GNN architecture was able to correct the nonphysical dose-response trend and improve ARCliDS recommendation. The average root mean squared difference (RMSD) between ARCliDS recommendation and reported clinical decisions using double GNNs were 0.61 [0.03] Gy/frac (mean [sem]) for adaptive RT in NSCLC patients and 2.96 [0.42] Gy/frac for adaptive SBRT HCC compared to the single GNN’s RMSDs of 0.97 [0.12] Gy/frac and 4.75 [0.16] Gy/frac, respectively. Overall, For NSCLC and HCC, ARCliDS with double GNNs was able to reproduce 36% and 50% of the good clinical decisions (local control and no side effects) and improve 74% and 30% of the bad clinical decisions, respectively. In conclusion, ARCliDS is the first web-based software dedicated to assist KBR-ART with multi-omics data. ARCliDS can learn from the reported clinical decisions and facilitate AI-assisted clinical decision-making for improving the outcomes in DTR. |
format | Online Article Text |
id | pubmed-10066294 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-100662942023-04-02 A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS) Niraula, Dipesh Sun, Wenbo Jin, Jionghua Dinov, Ivo D. Cuneo, Kyle Jamaluddin, Jamalina Matuszak, Martha M. Luo, Yi Lawrence, Theodore S. Jolly, Shruti Ten Haken, Randall K. El Naqa, Issam Sci Rep Article Involvement of many variables, uncertainty in treatment response, and inter-patient heterogeneity challenge objective decision-making in dynamic treatment regime (DTR) in oncology. Advanced machine learning analytics in conjunction with information-rich dense multi-omics data have the ability to overcome such challenges. We have developed a comprehensive artificial intelligence (AI)-based optimal decision-making framework for assisting oncologists in DTR. In this work, we demonstrate the proposed framework to Knowledge Based Response-Adaptive Radiotherapy (KBR-ART) applications by developing an interactive software tool entitled Adaptive Radiotherapy Clinical Decision Support (ARCliDS). ARCliDS is composed of two main components: Artifcial RT Environment (ARTE) and Optimal Decision Maker (ODM). ARTE is designed as a Markov decision process and modeled via supervised learning. Given a patient’s pre- and during-treatment information, ARTE can estimate treatment outcomes for a selected daily dosage value (radiation fraction size). ODM is formulated using reinforcement learning and is trained on ARTE. ODM can recommend optimal daily dosage adjustments to maximize the tumor local control probability and minimize the side effects. Graph Neural Networks (GNN) are applied to exploit the inter-feature relationships for improved modeling performance and a novel double GNN architecture is designed to avoid nonphysical treatment response. Datasets of size 117 and 292 were available from two clinical trials on adaptive RT in non-small cell lung cancer (NSCLC) patients and adaptive stereotactic body RT (SBRT) in hepatocellular carcinoma (HCC) patients, respectively. For training and validation, dense data with 297 features were available for 67 NSCLC patients and 110 features for 71 HCC patients. To increase the sample size for ODM training, we applied Generative Adversarial Networks to generate 10,000 synthetic patients. The ODM was trained on the synthetic patients and validated on the original dataset. We found that, Double GNN architecture was able to correct the nonphysical dose-response trend and improve ARCliDS recommendation. The average root mean squared difference (RMSD) between ARCliDS recommendation and reported clinical decisions using double GNNs were 0.61 [0.03] Gy/frac (mean [sem]) for adaptive RT in NSCLC patients and 2.96 [0.42] Gy/frac for adaptive SBRT HCC compared to the single GNN’s RMSDs of 0.97 [0.12] Gy/frac and 4.75 [0.16] Gy/frac, respectively. Overall, For NSCLC and HCC, ARCliDS with double GNNs was able to reproduce 36% and 50% of the good clinical decisions (local control and no side effects) and improve 74% and 30% of the bad clinical decisions, respectively. In conclusion, ARCliDS is the first web-based software dedicated to assist KBR-ART with multi-omics data. ARCliDS can learn from the reported clinical decisions and facilitate AI-assisted clinical decision-making for improving the outcomes in DTR. Nature Publishing Group UK 2023-03-31 /pmc/articles/PMC10066294/ /pubmed/37002296 http://dx.doi.org/10.1038/s41598-023-32032-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Niraula, Dipesh Sun, Wenbo Jin, Jionghua Dinov, Ivo D. Cuneo, Kyle Jamaluddin, Jamalina Matuszak, Martha M. Luo, Yi Lawrence, Theodore S. Jolly, Shruti Ten Haken, Randall K. El Naqa, Issam A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS) |
title | A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS) |
title_full | A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS) |
title_fullStr | A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS) |
title_full_unstemmed | A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS) |
title_short | A clinical decision support system for AI-assisted decision-making in response-adaptive radiotherapy (ARCliDS) |
title_sort | clinical decision support system for ai-assisted decision-making in response-adaptive radiotherapy (arclids) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10066294/ https://www.ncbi.nlm.nih.gov/pubmed/37002296 http://dx.doi.org/10.1038/s41598-023-32032-6 |
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