Cargando…

Comparative analysis of dimension reduction methods for cytometry by time-of-flight data

While experimental and informatic techniques around single cell sequencing (scRNA-seq) are advanced, research around mass cytometry (CyTOF) data analysis has severely lagged behind. CyTOF data are notably different from scRNA-seq data in many aspects. This calls for the evaluation and development of...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Kaiwen, Yang, Yuqiu, Wu, Fangjiang, Song, Bing, Wang, Xinlei, Wang, Tao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10067013/ https://www.ncbi.nlm.nih.gov/pubmed/37005472 http://dx.doi.org/10.1038/s41467-023-37478-w

Ejemplares similares

Cytomulate: accurate and efficient simulation of CyTOF data
por: Yang, Yuqiu, et al.
Publicado: (2023)

Sufficient dimension reduction: methods and applications with r
por: Li, Bing
Publicado: (2018)

Dimensioning Cuboid and Cylindrical Objects Using Only Noisy and Partially Observed Time-of-Flight Data
por: Rodriguez, Bryan, et al.
Publicado: (2023)

Heterogeneity of T Cells in Atherosclerosis Defined by Single-Cell RNA-Sequencing and Cytometry by Time of Flight
por: Winkels, Holger, et al.
Publicado: (2020)

Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data
por: Truntzer, Caroline, et al.
Publicado: (2007)

Towards a comprehensive evaluation of dimension reduction methods for transcriptomic data visualization
por: Huang, Haiyang, et al.
Publicado: (2022)

Time series analysis methods and applications for flight data
por: Zhang, Jianye, et al.
Publicado: (2017)

Efficient data reduction for time-of-flight neutron scattering experiments on single crystals
por: Savici, Andrei T., et al.
Publicado: (2022)

Immune cell census in murine atherosclerosis: cytometry by time of flight illuminates vascular myeloid cell diversity
por: Cole, Jennifer E, et al.
Publicado: (2018)

Variable Speed Across Dimensions of Ability in the Joint Model for Responses and Response Times
por: Zhan, Peida, et al.
Publicado: (2021)

Symposium on Neutron Time-of-flight Methods
por: Saepen, J
Publicado: (1961)

A Method for Comparing Multivariate Time Series with Different Dimensions
por: Tapinos, Avraam, et al.
Publicado: (2013)

Data reduction for spectral clustering to analyze high throughput flow cytometry data
por: Zare, Habil, et al.
Publicado: (2010)

Principal Manifolds for Data Visualization and Dimension Reduction
por: Gorban, A N, et al.
Publicado: (2007)

Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data
por: Bartenhagen, Christoph, et al.
Publicado: (2010)

Approximations to random flight functions in one, two and three dimensions
por: Cerulus, Frans Armand
Publicado: (1961)

A framework for significance analysis of gene expression data using dimension reduction methods
por: Gidskehaug, Lars, et al.
Publicado: (2007)

Dimension reduction and shrinkage methods for high dimensional disease risk scores in historical data
por: Kumamaru, Hiraku, et al.
Publicado: (2016)

Statistics for real-time deformability cytometry: Clustering, dimensionality reduction, and significance testing
por: Herbig, M., et al.
Publicado: (2018)

Dimension Reduction and Clustering Models for Single-Cell RNA Sequencing Data: A Comparative Study
por: Feng, Chao, et al.
Publicado: (2020)

An estimating equation approach to dimension reduction for longitudinal data
por: Xu, Kelin, et al.
Publicado: (2016)

Feature Selection and Dimension Reduction of Social Autism Data
por: Washington, Peter, et al.
Publicado: (2020)

Dimension reduction with gene expression data using targeted variable importance measurement
por: Wang, Hui, et al.
Publicado: (2011)

Matrix-assisted laser desorption ionization time-of-flight mass spectrometry combined with UF-5000i urine flow cytometry to directly identify pathogens in clinical urine specimens within 1 hour
por: Sun, Chuang, et al.
Publicado: (2020)

Dimensionality reduction by UMAP for visualizing and aiding in classification of imaging flow cytometry data
por: Stolarek, Ireneusz, et al.
Publicado: (2022)

A Survey of Flow Cytometry Data Analysis Methods
por: Bashashati, Ali, et al.
Publicado: (2009)

Methods for analyzing tellurium imaging mass cytometry data
por: Bassan, Jay, et al.
Publicado: (2019)

A comparison framework and guideline of clustering methods for mass cytometry data
por: Liu, Xiao, et al.
Publicado: (2019)

Comparison of Two Dimension-Reduction Methods for Network Simulation Models
por: Mills, Kevin L., et al.
Publicado: (2011)

A New Method Combining LDA and PLS for Dimension Reduction
por: Tang, Liang, et al.
Publicado: (2014)

Pulse processing routines for neutron time-of-flight data
por: Žugec, P., et al.
Publicado: (2016)

Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction
por: Laczny, Cedric C., et al.
Publicado: (2014)

Dimension reduction techniques for the integrative analysis of multi-omics data
por: Meng, Chen, et al.
Publicado: (2016)

VASC: Dimension Reduction and Visualization of Single-cell RNA-seq Data by Deep Variational Autoencoder
por: Wang, Dongfang, et al.
Publicado: (2018)

Data-driven assessment of dimension reduction quality for single-cell omics data
por: Dong, Xiaoru, et al.
Publicado: (2022)

Accurate wisdom of the crowd from unsupervised dimension reduction
por: Wang, Lingfei, et al.
Publicado: (2019)

Time-of-flight and dE/dx methods of particle identification
por: Butler, G W
Publicado: (1976)

Comparison of dimension reduction methods on fatty acids food source study
por: Chen, Yifan, et al.
Publicado: (2021)

A comparative study of multiple instance learning methods for cancer detection using T-cell receptor sequences
por: Xiong, Danyi, et al.
Publicado: (2021)

A dimension reduction technique applied to regression on high dimension, low sample size neurophysiological data sets
por: Santana, Adrielle C., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_asuggbu53m4iavv2lms6d72oh0