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DeepNAPSI multi-reader nail psoriasis prediction using deep learning
Nail psoriasis occurs in about every second psoriasis patient. Both, finger and toe nails can be affected and also severely destroyed. Furthermore, nail psoriasis is associated with a more severe course of the disease and the development of psoriatic arthritis. User independent quantification of nai...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10067940/ https://www.ncbi.nlm.nih.gov/pubmed/37005487 http://dx.doi.org/10.1038/s41598-023-32440-8 |
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author | Folle, Lukas Fenzl, Pauline Fagni, Filippo Thies, Mareike Christlein, Vincent Meder, Christine Simon, David Minopoulou, Ioanna Sticherling, Michael Schett, Georg Maier, Andreas Kleyer, Arnd |
author_facet | Folle, Lukas Fenzl, Pauline Fagni, Filippo Thies, Mareike Christlein, Vincent Meder, Christine Simon, David Minopoulou, Ioanna Sticherling, Michael Schett, Georg Maier, Andreas Kleyer, Arnd |
author_sort | Folle, Lukas |
collection | PubMed |
description | Nail psoriasis occurs in about every second psoriasis patient. Both, finger and toe nails can be affected and also severely destroyed. Furthermore, nail psoriasis is associated with a more severe course of the disease and the development of psoriatic arthritis. User independent quantification of nail psoriasis, however, is challenging due to the heterogeneous involvement of matrix and nail bed. For this purpose, the nail psoriasis severity index (NAPSI) has been developed. Experts grade pathological changes of each nail of the patient leading to a maximum score of 80 for all nails of the hands. Application in clinical practice, however, is not feasible due to the time-intensive manual grading process especially if more nails are involved. In this work we aimed to automatically quantify the modified NAPSI (mNAPSI) of patients using neuronal networks retrospectively. First, we performed photographs of the hands of patients with psoriasis, psoriatic arthritis, and rheumatoid arthritis. In a second step, we collected and annotated the mNAPSI scores of 1154 nail photos. Followingly, we extracted each nail automatically using an automatic key-point-detection system. The agreement among the three readers with a Cronbach’s alpha of 94% was very high. With the nail images individually available, we trained a transformer-based neural network (BEiT) to predict the mNAPSI score. The network reached a good performance with an area-under-receiver-operator-curve of 88% and an area-under precision-recall-curve (PR-AUC) of 63%. We could compare the results with the human annotations and achieved a very high positive Pearson correlation of 90% by aggregating the predictions of the network on the test set to the patient-level. Lastly, we provided open access to the whole system enabling the use of the mNAPSI in clinical practice. |
format | Online Article Text |
id | pubmed-10067940 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-100679402023-04-04 DeepNAPSI multi-reader nail psoriasis prediction using deep learning Folle, Lukas Fenzl, Pauline Fagni, Filippo Thies, Mareike Christlein, Vincent Meder, Christine Simon, David Minopoulou, Ioanna Sticherling, Michael Schett, Georg Maier, Andreas Kleyer, Arnd Sci Rep Article Nail psoriasis occurs in about every second psoriasis patient. Both, finger and toe nails can be affected and also severely destroyed. Furthermore, nail psoriasis is associated with a more severe course of the disease and the development of psoriatic arthritis. User independent quantification of nail psoriasis, however, is challenging due to the heterogeneous involvement of matrix and nail bed. For this purpose, the nail psoriasis severity index (NAPSI) has been developed. Experts grade pathological changes of each nail of the patient leading to a maximum score of 80 for all nails of the hands. Application in clinical practice, however, is not feasible due to the time-intensive manual grading process especially if more nails are involved. In this work we aimed to automatically quantify the modified NAPSI (mNAPSI) of patients using neuronal networks retrospectively. First, we performed photographs of the hands of patients with psoriasis, psoriatic arthritis, and rheumatoid arthritis. In a second step, we collected and annotated the mNAPSI scores of 1154 nail photos. Followingly, we extracted each nail automatically using an automatic key-point-detection system. The agreement among the three readers with a Cronbach’s alpha of 94% was very high. With the nail images individually available, we trained a transformer-based neural network (BEiT) to predict the mNAPSI score. The network reached a good performance with an area-under-receiver-operator-curve of 88% and an area-under precision-recall-curve (PR-AUC) of 63%. We could compare the results with the human annotations and achieved a very high positive Pearson correlation of 90% by aggregating the predictions of the network on the test set to the patient-level. Lastly, we provided open access to the whole system enabling the use of the mNAPSI in clinical practice. Nature Publishing Group UK 2023-04-01 /pmc/articles/PMC10067940/ /pubmed/37005487 http://dx.doi.org/10.1038/s41598-023-32440-8 Text en © The Author(s) 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Folle, Lukas Fenzl, Pauline Fagni, Filippo Thies, Mareike Christlein, Vincent Meder, Christine Simon, David Minopoulou, Ioanna Sticherling, Michael Schett, Georg Maier, Andreas Kleyer, Arnd DeepNAPSI multi-reader nail psoriasis prediction using deep learning |
title | DeepNAPSI multi-reader nail psoriasis prediction using deep learning |
title_full | DeepNAPSI multi-reader nail psoriasis prediction using deep learning |
title_fullStr | DeepNAPSI multi-reader nail psoriasis prediction using deep learning |
title_full_unstemmed | DeepNAPSI multi-reader nail psoriasis prediction using deep learning |
title_short | DeepNAPSI multi-reader nail psoriasis prediction using deep learning |
title_sort | deepnapsi multi-reader nail psoriasis prediction using deep learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10067940/ https://www.ncbi.nlm.nih.gov/pubmed/37005487 http://dx.doi.org/10.1038/s41598-023-32440-8 |
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