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Exploratory data fusion of untargeted multimodal LC-HRMS with annotation by LCMS-TOF-ion mobility: White wine case study
Applied sciences have increased focus on omics studies which merge data science with analytical tools. These studies often result in large amounts of data produced and the objective is to generate meaningful interpretations from them. This can sometimes mean combining and integrating different datas...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10068406/ https://www.ncbi.nlm.nih.gov/pubmed/36942424 http://dx.doi.org/10.1177/14690667231164096 |
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author | Mafata, Mpho Stander, Maria Masike, Keabetswe Buica, Astrid |
author_facet | Mafata, Mpho Stander, Maria Masike, Keabetswe Buica, Astrid |
author_sort | Mafata, Mpho |
collection | PubMed |
description | Applied sciences have increased focus on omics studies which merge data science with analytical tools. These studies often result in large amounts of data produced and the objective is to generate meaningful interpretations from them. This can sometimes mean combining and integrating different datasets through data fusion techniques. The most strategic course of action when dealing with products of unknown profile is to use exploratory approaches. For omics, this means using untargeted analytical methods and exploratory data analysis techniques. The current study aimed to perform data fusion on untargeted multimodal (negative and positive mode) liquid chromatography–high-resolution mass spectrometry data using multiple factor analysis. The data fusion results were interpreted using agglomerative hierarchical clustering on biplot projections. The study reduced the thousands of spectral signals processed to less than a hundred features (a primary parameter combination of retention time and mass-to-charge ratios, RT_m/z). The correlations between cluster members (samples and features from) were calculated and the top 10% highly correlated features were identified for each cluster. These features were then tentatively identified using secondary parameters (drift time, ion mobility constant and collision cross-section values) from the ion mobility spectra. These ion mobility (secondary) parameters can be used for future studies in wine chemical analysis and added to the growing list of annotated chemical signals in applied sciences. |
format | Online Article Text |
id | pubmed-10068406 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-100684062023-04-04 Exploratory data fusion of untargeted multimodal LC-HRMS with annotation by LCMS-TOF-ion mobility: White wine case study Mafata, Mpho Stander, Maria Masike, Keabetswe Buica, Astrid Eur J Mass Spectrom (Chichester) Original Research Papers Applied sciences have increased focus on omics studies which merge data science with analytical tools. These studies often result in large amounts of data produced and the objective is to generate meaningful interpretations from them. This can sometimes mean combining and integrating different datasets through data fusion techniques. The most strategic course of action when dealing with products of unknown profile is to use exploratory approaches. For omics, this means using untargeted analytical methods and exploratory data analysis techniques. The current study aimed to perform data fusion on untargeted multimodal (negative and positive mode) liquid chromatography–high-resolution mass spectrometry data using multiple factor analysis. The data fusion results were interpreted using agglomerative hierarchical clustering on biplot projections. The study reduced the thousands of spectral signals processed to less than a hundred features (a primary parameter combination of retention time and mass-to-charge ratios, RT_m/z). The correlations between cluster members (samples and features from) were calculated and the top 10% highly correlated features were identified for each cluster. These features were then tentatively identified using secondary parameters (drift time, ion mobility constant and collision cross-section values) from the ion mobility spectra. These ion mobility (secondary) parameters can be used for future studies in wine chemical analysis and added to the growing list of annotated chemical signals in applied sciences. SAGE Publications 2023-03-21 2023-04 /pmc/articles/PMC10068406/ /pubmed/36942424 http://dx.doi.org/10.1177/14690667231164096 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Research Papers Mafata, Mpho Stander, Maria Masike, Keabetswe Buica, Astrid Exploratory data fusion of untargeted multimodal LC-HRMS with annotation by LCMS-TOF-ion mobility: White wine case study |
title | Exploratory data fusion of untargeted multimodal LC-HRMS with
annotation by LCMS-TOF-ion mobility: White wine case study |
title_full | Exploratory data fusion of untargeted multimodal LC-HRMS with
annotation by LCMS-TOF-ion mobility: White wine case study |
title_fullStr | Exploratory data fusion of untargeted multimodal LC-HRMS with
annotation by LCMS-TOF-ion mobility: White wine case study |
title_full_unstemmed | Exploratory data fusion of untargeted multimodal LC-HRMS with
annotation by LCMS-TOF-ion mobility: White wine case study |
title_short | Exploratory data fusion of untargeted multimodal LC-HRMS with
annotation by LCMS-TOF-ion mobility: White wine case study |
title_sort | exploratory data fusion of untargeted multimodal lc-hrms with
annotation by lcms-tof-ion mobility: white wine case study |
topic | Original Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10068406/ https://www.ncbi.nlm.nih.gov/pubmed/36942424 http://dx.doi.org/10.1177/14690667231164096 |
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