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An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms

The immune cells play an increasingly vital role in influencing the proliferation, progression, and metastasis of lung adenocarcinoma (LUAD) cells. However, the potential of immune cells' specific genes‐based model remains largely unknown. In the current study, by analysing single‐cell RNA sequ...

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Autores principales: Zhang, Nan, Zhang, Hao, Liu, Zaoqu, Dai, Ziyu, Wu, Wantao, Zhou, Ran, Li, Shuyu, Wang, Zeyu, Liang, Xisong, Wen, Jie, Zhang, Xun, Zhang, Bo, Ouyang, Sirui, Zhang, Jian, Luo, Peng, Li, Xizhe, Cheng, Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10068958/
https://www.ncbi.nlm.nih.gov/pubmed/36822595
http://dx.doi.org/10.1111/cpr.13409
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author Zhang, Nan
Zhang, Hao
Liu, Zaoqu
Dai, Ziyu
Wu, Wantao
Zhou, Ran
Li, Shuyu
Wang, Zeyu
Liang, Xisong
Wen, Jie
Zhang, Xun
Zhang, Bo
Ouyang, Sirui
Zhang, Jian
Luo, Peng
Li, Xizhe
Cheng, Quan
author_facet Zhang, Nan
Zhang, Hao
Liu, Zaoqu
Dai, Ziyu
Wu, Wantao
Zhou, Ran
Li, Shuyu
Wang, Zeyu
Liang, Xisong
Wen, Jie
Zhang, Xun
Zhang, Bo
Ouyang, Sirui
Zhang, Jian
Luo, Peng
Li, Xizhe
Cheng, Quan
author_sort Zhang, Nan
collection PubMed
description The immune cells play an increasingly vital role in influencing the proliferation, progression, and metastasis of lung adenocarcinoma (LUAD) cells. However, the potential of immune cells' specific genes‐based model remains largely unknown. In the current study, by analysing single‐cell RNA sequencing (scRNA‐seq) data and bulk RNA sequencing data, the tumour‐infiltrating immune cell (TIIC) associated signature was developed based on a total of 26 machine learning (ML) algorithms. As a result, the TIIC signature score could predict survival outcomes of LUAD patients across five independent datasets. The TIIC signature score showed superior performance to 168 previously established signatures in LUAD. Moreover, the TIIC signature score developed by the immunofluorescence staining of the tissue array of LUAD patients showed a prognostic value. Our research revealed a solid connection between TIIC signature score and tumour immunity as well as metabolism. Additionally, it has been discovered that the TIIC signature score can forecast genomic change, chemotherapeutic drug susceptibility, and—most significantly—immunotherapeutic response. As a newly demonstrated biomarker, the TIIC signature score facilitated the selection of the LUAD population who would benefit from future clinical stratification.
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spelling pubmed-100689582023-04-04 An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms Zhang, Nan Zhang, Hao Liu, Zaoqu Dai, Ziyu Wu, Wantao Zhou, Ran Li, Shuyu Wang, Zeyu Liang, Xisong Wen, Jie Zhang, Xun Zhang, Bo Ouyang, Sirui Zhang, Jian Luo, Peng Li, Xizhe Cheng, Quan Cell Prolif Original Articles The immune cells play an increasingly vital role in influencing the proliferation, progression, and metastasis of lung adenocarcinoma (LUAD) cells. However, the potential of immune cells' specific genes‐based model remains largely unknown. In the current study, by analysing single‐cell RNA sequencing (scRNA‐seq) data and bulk RNA sequencing data, the tumour‐infiltrating immune cell (TIIC) associated signature was developed based on a total of 26 machine learning (ML) algorithms. As a result, the TIIC signature score could predict survival outcomes of LUAD patients across five independent datasets. The TIIC signature score showed superior performance to 168 previously established signatures in LUAD. Moreover, the TIIC signature score developed by the immunofluorescence staining of the tissue array of LUAD patients showed a prognostic value. Our research revealed a solid connection between TIIC signature score and tumour immunity as well as metabolism. Additionally, it has been discovered that the TIIC signature score can forecast genomic change, chemotherapeutic drug susceptibility, and—most significantly—immunotherapeutic response. As a newly demonstrated biomarker, the TIIC signature score facilitated the selection of the LUAD population who would benefit from future clinical stratification. John Wiley and Sons Inc. 2023-02-23 /pmc/articles/PMC10068958/ /pubmed/36822595 http://dx.doi.org/10.1111/cpr.13409 Text en © 2023 The Authors. Cell Proliferation published by Beijing Institute for Stem Cell and Regenerative Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Zhang, Nan
Zhang, Hao
Liu, Zaoqu
Dai, Ziyu
Wu, Wantao
Zhou, Ran
Li, Shuyu
Wang, Zeyu
Liang, Xisong
Wen, Jie
Zhang, Xun
Zhang, Bo
Ouyang, Sirui
Zhang, Jian
Luo, Peng
Li, Xizhe
Cheng, Quan
An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms
title An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms
title_full An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms
title_fullStr An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms
title_full_unstemmed An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms
title_short An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms
title_sort artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine learning algorithms
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10068958/
https://www.ncbi.nlm.nih.gov/pubmed/36822595
http://dx.doi.org/10.1111/cpr.13409
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