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Systematic analysis of cell morphodynamics in C. elegans early embryogenesis

The invariant cell lineage of Caenorhabditis elegans allows unambiguous assignment of the identity for each cell, which offers a unique opportunity to study developmental dynamics such as the timing of cell division, dynamics of gene expression, and cell fate decisions at single-cell resolution. How...

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Autores principales: Azuma, Yusuke, Okada, Hatsumi, Onami, Shuichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10070942/
https://www.ncbi.nlm.nih.gov/pubmed/37026092
http://dx.doi.org/10.3389/fbinf.2023.1082531
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author Azuma, Yusuke
Okada, Hatsumi
Onami, Shuichi
author_facet Azuma, Yusuke
Okada, Hatsumi
Onami, Shuichi
author_sort Azuma, Yusuke
collection PubMed
description The invariant cell lineage of Caenorhabditis elegans allows unambiguous assignment of the identity for each cell, which offers a unique opportunity to study developmental dynamics such as the timing of cell division, dynamics of gene expression, and cell fate decisions at single-cell resolution. However, little is known about cell morphodynamics, including the extent to which they are variable between individuals, mainly due to the lack of sufficient amount and quality of quantified data. In this study, we systematically quantified the cell morphodynamics in 52 C. elegans embryos from the two-cell stage to mid-gastrulation at the high spatiotemporal resolution, 0.5 μm thickness of optical sections, and 30-second intervals of recordings. Our data allowed systematic analyses of the morphological features. We analyzed sphericity dynamics and found a significant increase at the end of metaphase in every cell, indicating the universality of the mitotic cell rounding. Concomitant with the rounding, the volume also increased in most but not all cells, suggesting less universality of the mitotic swelling. Combining all features showed that cell morphodynamics was unique for each cell type. The cells before the onset of gastrulation could be distinguished from all the other cell types. Quantification of reproducibility in cell-cell contact revealed that variability in division timings and cell arrangements produced variability in contacts between the embryos. However, the area of such contacts occupied less than 5% of the total area, suggesting the high reproducibility of spatial occupancies and adjacency relationships of the cells. By comparing the morphodynamics of identical cells between the embryos, we observed diversity in the variability between cells and found it was determined by multiple factors, including cell lineage, cell generation, and cell-cell contact. We compared the variabilities of cell morphodynamics and cell-cell contacts with those in ascidian Phallusia mammillata embryos. The variabilities were larger in C. elegans, despite smaller differences in embryo size and number of cells at each developmental stage.
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spelling pubmed-100709422023-04-05 Systematic analysis of cell morphodynamics in C. elegans early embryogenesis Azuma, Yusuke Okada, Hatsumi Onami, Shuichi Front Bioinform Bioinformatics The invariant cell lineage of Caenorhabditis elegans allows unambiguous assignment of the identity for each cell, which offers a unique opportunity to study developmental dynamics such as the timing of cell division, dynamics of gene expression, and cell fate decisions at single-cell resolution. However, little is known about cell morphodynamics, including the extent to which they are variable between individuals, mainly due to the lack of sufficient amount and quality of quantified data. In this study, we systematically quantified the cell morphodynamics in 52 C. elegans embryos from the two-cell stage to mid-gastrulation at the high spatiotemporal resolution, 0.5 μm thickness of optical sections, and 30-second intervals of recordings. Our data allowed systematic analyses of the morphological features. We analyzed sphericity dynamics and found a significant increase at the end of metaphase in every cell, indicating the universality of the mitotic cell rounding. Concomitant with the rounding, the volume also increased in most but not all cells, suggesting less universality of the mitotic swelling. Combining all features showed that cell morphodynamics was unique for each cell type. The cells before the onset of gastrulation could be distinguished from all the other cell types. Quantification of reproducibility in cell-cell contact revealed that variability in division timings and cell arrangements produced variability in contacts between the embryos. However, the area of such contacts occupied less than 5% of the total area, suggesting the high reproducibility of spatial occupancies and adjacency relationships of the cells. By comparing the morphodynamics of identical cells between the embryos, we observed diversity in the variability between cells and found it was determined by multiple factors, including cell lineage, cell generation, and cell-cell contact. We compared the variabilities of cell morphodynamics and cell-cell contacts with those in ascidian Phallusia mammillata embryos. The variabilities were larger in C. elegans, despite smaller differences in embryo size and number of cells at each developmental stage. Frontiers Media S.A. 2023-03-21 /pmc/articles/PMC10070942/ /pubmed/37026092 http://dx.doi.org/10.3389/fbinf.2023.1082531 Text en Copyright © 2023 Azuma, Okada and Onami. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioinformatics
Azuma, Yusuke
Okada, Hatsumi
Onami, Shuichi
Systematic analysis of cell morphodynamics in C. elegans early embryogenesis
title Systematic analysis of cell morphodynamics in C. elegans early embryogenesis
title_full Systematic analysis of cell morphodynamics in C. elegans early embryogenesis
title_fullStr Systematic analysis of cell morphodynamics in C. elegans early embryogenesis
title_full_unstemmed Systematic analysis of cell morphodynamics in C. elegans early embryogenesis
title_short Systematic analysis of cell morphodynamics in C. elegans early embryogenesis
title_sort systematic analysis of cell morphodynamics in c. elegans early embryogenesis
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10070942/
https://www.ncbi.nlm.nih.gov/pubmed/37026092
http://dx.doi.org/10.3389/fbinf.2023.1082531
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